Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00854 ATGGGGGAGGGTGAAGGTGAGGGGAGTGATTGCGCTCCAAAGAATGTTTTGCCTAACGACGTAGTCGGGAATGCGCTTTTGTCGTCCGATGTTCCCGCCAAGAAGCTTGCCAGGCAGCTCGATTTCACTGGCTTCGGCGGGATTCCGCCTCAGCCACCGGTGGTTTTGCCGCTGCCGCCTTCTGCTTCCGTCAGGGTTGGGAAACCAGAATCTCCTAAGTCAAGACCGAGGCCTGGCTTTGAAATCAAAGAAGCTACTCCCAAGAAGCAAAAGCAGTGCAATTGTAAACATTCCAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTATAACAATGTGGAAAATGAAACTGCTAGACGAGAAGCGGTAGAAGCTACTTTGGAACGCAATCCAAATGCGTTCAGGCCGAAAATTGCAAGCAGCCCTCATGGAACGCGTGATAGCAGGGAGGATGCTGGGGAAATTTTGATATTGGGAAAGCACAACAAGGGGTGCCATTGTAAAAAATCTGGGTGTCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGCTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGCAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTCTATATTCAGCAGGCGGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCATCACCACCAATAACAAAGAGAAGAAAAGGTCAAGAACTATTATTCGGACCAACCGTCAAGGATCCATCAGTTGGCCGGCTGGGACATCAGGCAAACAATGTCAGAGTTCCTGCACCCTCCTCGTCCTTGTCACCTATCCCAAGTGCTCGTGTTGGACCGGCAACATTAGGTCCCTCCAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAGCCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAGAGCAGAAAAATTTAATGGATAAGTATGCAGAAGATCAGACAGAAACTTCTCTTGCTTTTTCAACTCAGGATCAATTACTAAGCCAAAAGGAATCTAATGTTGAGAAAGCTATGGCTGATGATGATTGTTTGAGTGCAAACCATACAGATAAAATCAGCCCAGATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACCTTAGCATTGATGTGCGATGAGCAAGACACGTTTATGACAGCTGCCTCCCCTGTTGGATCAAGGCCGCATGCTTGCAACACATCTATACAACCCCATGATGGACAAGGAGTGACAGAGGTCTATGCCGAGCAAGAAAGGATTGTATTGACAAAATTTAGAGACTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAATGTTCTTCGTTAGCTAGAAGTGATTTAGAGAGTCCAAAGGACCCGGACAACAATTGCACTGGAAATACCAGTACCGAGACAGCTGATCAGCCGGGAGCCACTAATAATGGTGTTGCCAAAGCTGGGGGCAGCATTACTTCTACATCTTTGTTCCCTGGTGGTAGCCTTATTCCTGAAAAGTAG 1647 0.4554 MGEGEGEGSDCAPKNVLPNDVVGNALLSSDVPAKKLARQLDFTGFGGIPPQPPVVLPLPPSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENETARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPITKRRKGQELLFGPTVKDPSVGRLGHQANNVRVPAPSSSLSPIPSARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTEQKNLMDKYAEDQTETSLAFSTQDQLLSQKESNVEKAMADDDCLSANHTDKISPDNSCSDGADVPKGRPMSPGTLALMCDEQDTFMTAASPVGSRPHACNTSIQPHDGQGVTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSDLESPKDPDNNCTGNTSTETADQPGATNNGVAKAGGSITSTSLFPGGSLIPEK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00854 548 PANTHER TESMIN/TSO1-RELATED 54 484 IPR028307 -
Spst3g00854 548 SMART CXC_2 173 214 IPR033467 -
Spst3g00854 548 SMART CXC_2 88 128 IPR033467 -
Spst3g00854 548 MobiDBLite consensus disorder prediction 493 548 - -
Spst3g00854 548 ProSiteProfiles CRC domain profile. 89 213 IPR005172 -
Spst3g00854 548 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 90 125 IPR005172 -
Spst3g00854 548 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 176 210 IPR005172 -
Spst3g00854 548 MobiDBLite consensus disorder prediction 48 81 - -
Spst3g00854 548 MobiDBLite consensus disorder prediction 502 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00854 Spst-Chr3 11987785 11993809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00854 31 500 CPP Transcription Factor Family AT4G29000 58.254 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Spst3g00854 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00854 - - gmx:100786353 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00854 3 11987785 11993809 Spst3g00854 3 11987785 11993809 ECH