Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00849 ATGCATAGATCATTTCTGAAATGCGATGATCCAAAAGGAGTTGTAGAATGTGGAACAATCAGGAAATACAGGACCCGTTCTCACAAAGTGAAGGACAAGACAAAAATCCAGAAGACAAGTGAAAACTTGGAGACATCCTTGATCAACAACAGATACAAAGTGAAGAAGGTCGCCAAAGGATGTGATGGAAATCTCATTGGCCCATCATCTTTGCATCTCACACAGGCCTCCGCAGAGGATACTGGTTGGAATAACATTCTGGATTCATGGTCTAGAGATATTATGTGTGAAAGAAAGTCCAAAGATATTGCAAAAGGTAATTTAAGAGGAGCTATTGGTCGGCAAGATTCTGTAAGCATGCTTCGTAAGTTGCAAGAGAAGGCTTCACAGCATACAGCTACTTTTGGGAGAAAACAGACTAAGAAACCAGAAAGAGACAGAACTGATGGAAACAGGATTGGTAGAACGCAGGCTAATCCATTAGGGGAACAAAGTAATCCAAAGGGGTTTCATAGACCAGAGACTTCTGCTTGTGGTTCTTCAAGTAACTGCAAAGAGGAACTTAAGAAGGTGGTTACGGAGAGTTTAGTTTGGCAAAATATGTTTCCAAAGACCACTGAAGGATTTGATTCAGGTTCAGAAACTTTTTCTTCAAGCACAAGCCAGTGTTCTGGGGTCAGGACTAACAGCCTTTCCGATCATTCTTTATCAGTAATAGCTCCAAAGACCGAAAGAGGACCTAGCCTAGTTTTCAAGCTGATGGGTTTGGAAGAAGCCCCCTCAAAATCATTTCCAGCTATAAAGCAGAAACTGTTGGATGGTAAGATAGATATGTCAAAGGTAAGAAGGAAAGATCATACAGCTGAGAGGGGTAATCCAGAACAAAAAGGACTGAGGGAAACTCTTGACACTATGCATTTCAAAAGTATTTTGAAGGAGAGGTTTGTCAAAGATCCTAAGCTTCGTATGCATCATTTCAATGATACCAGTTCCAAGCAGTTTGGTGATTTATCTCGCATTGCACTTATGAAACCTCAATGTAATCTTTACCAGGAATCAGTAAAACGTGCCTATATTCCAATTCTTCCAAAAGACTTTCCCATAACAAAACTGAAAGCAGAAATAGCCTCTTCCAAAACTATCAAACAAAGAAAAGGTTCCAGTTCCGCCAATATGGGAAAAGAAATGGAAAATGGTATAAGGAAACGGCTTAACAAAGAGGAAGGACCTAGATTTCTCGAAGAGATTATTAAACTGGAATCAAAAGGAAGCTATCCTGTTGAAGAATATTCAGGTAAGGTAAGACTGTATTGTCACATTGGTCACACATCACAGGTAAATGAGACAATTGATAGAAAATGGAAGGTACAGCCCATTAGTGGAAAACAGCCAGAAAAGGATATCTCACAACCTACAACTGTGGCAAAACCTCAATATCAACGACGAGAAATCCCCTCCACAAAATTGAGGAAGCTAAGAAGTGGATCTAGAATCGACAAGAATGAGATTTCCTACCTAAAGAGCACAGGTTCAAACAACACCTGCACTCAAGAAACTAAGAATTCCAAGGACCTTAATGTTGAGATTAAAAAAATTAATTCTGTGGTAGATTCCTTAACAGGTAGAACGAATCAGATGAAAAACCAAATCCCTGTTGCTGAGCCAGAACCAGCTAAACTAACTGTTGAACAAATCATGCGAAGAGAAAAGAAGAAAATTTTTCCTGAGATTAGAATCGCCACAAGACTAGAAGATGAACTCCTGATGTTGTGTGAAGCAGATGCCTTCATAAATAAGATTGGAGAAAAATGCAAGCAGAGGAAGAATTCTTCAGGCAATGATCTCATTATGCCACTGAGATCTGAACATATAAATGATGCTATCGCTGCTTATAGCATTGATGCTGGGAAAGAGGGGACAGAGCTGAAACATTTTCTTCTAACAAGTCCATCATTCATAGGACATGCAAAGAAGCTCTTCAATCTAGACGTGGATTATCCCAACACCCTACAAAAGAATGAAACTATTTACAGCATGCTCAATCTTAGGCTTTATTTGGATTGCGCTTATGAACTGAGTGAACGTAAAAGTCTTCAAGAGTCTCAAGTAGCTCGTTCTCTCTTGCTAGCATGTGGGGGGAACTCAAGATTACAAATGTCCTTAGGCAGGTTGGTGGAAGAGATCTGTGATGGCATTGAGAATCTGAAATTTTACAAAGAAGATTATGATTCTGGGGCGGAAGGTTTTGAAGACAATGATGTGTTTGCAATGATGGAGAAAGACATGAAGTGCAATGGAGAGACGAATGGTATGTGGGAGAGTGGTTGGAAGCGAGGCTTTTGTGCAGACGAGGCTGGTCTCGTTGTCAATAAAATAGAGAGCCTGCTTATAACTGGATTAATTGAGGACCTTGTCATCAATTTATGA 2427 0.3988 MHRSFLKCDDPKGVVECGTIRKYRTRSHKVKDKTKIQKTSENLETSLINNRYKVKKVAKGCDGNLIGPSSLHLTQASAEDTGWNNILDSWSRDIMCERKSKDIAKGNLRGAIGRQDSVSMLRKLQEKASQHTATFGRKQTKKPERDRTDGNRIGRTQANPLGEQSNPKGFHRPETSACGSSSNCKEELKKVVTESLVWQNMFPKTTEGFDSGSETFSSSTSQCSGVRTNSLSDHSLSVIAPKTERGPSLVFKLMGLEEAPSKSFPAIKQKLLDGKIDMSKVRRKDHTAERGNPEQKGLRETLDTMHFKSILKERFVKDPKLRMHHFNDTSSKQFGDLSRIALMKPQCNLYQESVKRAYIPILPKDFPITKLKAEIASSKTIKQRKGSSSANMGKEMENGIRKRLNKEEGPRFLEEIIKLESKGSYPVEEYSGKVRLYCHIGHTSQVNETIDRKWKVQPISGKQPEKDISQPTTVAKPQYQRREIPSTKLRKLRSGSRIDKNEISYLKSTGSNNTCTQETKNSKDLNVEIKKINSVVDSLTGRTNQMKNQIPVAEPEPAKLTVEQIMRREKKKIFPEIRIATRLEDELLMLCEADAFINKIGEKCKQRKNSSGNDLIMPLRSEHINDAIAAYSIDAGKEGTELKHFLLTSPSFIGHAKKLFNLDVDYPNTLQKNETIYSMLNLRLYLDCAYELSERKSLQESQVARSLLLACGGNSRLQMSLGRLVEEICDGIENLKFYKEDYDSGAEGFEDNDVFAMMEKDMKCNGETNGMWESGWKRGFCADEAGLVVNKIESLLITGLIEDLVINL 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00849 808 MobiDBLite consensus disorder prediction 458 486 - -
Spst3g00849 808 PANTHER OS01G0228800 PROTEIN-RELATED 3 806 - -
Spst3g00849 808 MobiDBLite consensus disorder prediction 124 183 - -
Spst3g00849 808 MobiDBLite consensus disorder prediction 153 183 - -
Spst3g00849 808 MobiDBLite consensus disorder prediction 463 480 - -
Spst3g00849 808 MobiDBLite consensus disorder prediction 137 152 - -
Spst3g00849 808 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00849 Spst-Chr3 11966946 11969993 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00849 642 805 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 32.941 1.46e-19 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00849 - - var:108346558 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00849 3 11966946 11969993 Spst3g00849 3 11966946 11969993 ECH
Spst3g00849 3 11966946 11969993 Spst4g02667 4 66602514 66605493 PCT