Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00846 ATGACTTCTCTCTCGGTCTTTCCATCACTCCCATCGCTTCAAAACCCTAACCTCACTCATCCCCACCTCTCCAATTTCATCTACTTCCCTTTCAATTCCACGCTTTCTTTCGCTCCACTCTCTCGCCGTAAATTCCTCTGCAAAGCGTTCAGGGATTCCGGCGAGGACATCAAAGCGGTCCTCAAGTCAGACGACGGAGGCGCTGGCGGAGACGGCGGTGGAGACGGTGGAGGTGACCGGGACGCGGAGAAAAAAGAAGGGCCTTTGCCGGAGTGGTTGAATTTCACTTCTGATGACGCCAAAACAGTGCTTGCGGCTATCGCAATTTCGCTTGCGTTTCGCACCTTCGTAGCGGAGCCTAGGTACATTCCTTCGCTGTCCATGTATCCTACATTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCTTACTATTTTAGAAAACCCTGTGCAAGTGACATAGTGATATTTAAAAGCCCTCCAGTGCTTCAAGAAGTTGGATATAGTGATGACGATGTTTTTATAAAGCGTGTGGTTGCTAAGGAAGGTGATACTGTGGAGGTCCGTAAAGGGCATCTTATAGTTAACGGGGTTGAGAGGAATGAAGACTACATTCTTGAACCTCCTGTATACGAGATGAAACCCACACGTGTGCCAGAAGACTACGTGTTTGTGATGGGAGACAACCGCAACAACAGCTATGATTCTCATGTTTGGGGTCCCCTGCCATCGAAGAACATCATAGGTAGATCAGTATTTCGGTATTGGCCACCAAATAGAATTGCTGGAACAGTTTCTAAGGATAGTTGCAGTGTTGAAACCTCCCAGGAGAGTGCAGAGACTGCTCTACCTTCTCAATGA 864 0.4769 MTSLSVFPSLPSLQNPNLTHPHLSNFIYFPFNSTLSFAPLSRRKFLCKAFRDSGEDIKAVLKSDDGGAGGDGGGDGGGDRDAEKKEGPLPEWLNFTSDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDTVEVRKGHLIVNGVERNEDYILEPPVYEMKPTRVPEDYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTVSKDSCSVETSQESAETALPSQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00846 287 CDD S26_SPase_I 119 251 IPR019533 GO:0004252|GO:0006465
Spst3g00846 287 FunFam Peptidase/ serine-type peptidase 125 256 - -
Spst3g00846 287 Gene3D Umud Fragment, subunit A 113 272 - -
Spst3g00846 287 SUPERFAMILY LexA/Signal peptidase 114 263 IPR036286 -
Spst3g00846 287 ProSitePatterns Signal peptidases I signature 3. 224 237 IPR019758 GO:0004252|GO:0016020
Spst3g00846 287 NCBIfam signal peptidase I 101 259 IPR000223 GO:0006508|GO:0008236|GO:0016020
Spst3g00846 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 116 132 IPR000223 GO:0006508|GO:0008236|GO:0016020
Spst3g00846 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 219 238 IPR000223 GO:0006508|GO:0008236|GO:0016020
Spst3g00846 287 PRINTS Bacterial leader peptidase 1 (S26A) family signature 175 187 IPR000223 GO:0006508|GO:0008236|GO:0016020
Spst3g00846 287 ProSitePatterns Signal peptidases I serine active site. 125 132 IPR019756 GO:0004252|GO:0016020
Spst3g00846 287 Pfam Signal peptidase, peptidase S26 100 257 IPR019533 GO:0004252|GO:0006465
Spst3g00846 287 PANTHER SIGNAL PEPTIDASE I 88 263 IPR000223 GO:0006508|GO:0008236|GO:0016020
Spst3g00846 287 MobiDBLite consensus disorder prediction 61 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00846 Spst-Chr3 11954927 11957582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00846 128 258 MADS-box Gene Family AT1G29960 31.061 3.59e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00846 K03100 - gmx:100815810 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00846 3 11954927 11957582 Spst3g00846 3 11954927 11957582 ECH