Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00830 ATGAGTGCTCTCTCACACTCCAGTAATGCCCACAACAATTCCTTCTTCACCATCCCCACCATCAAGTTCACCAAGCTCTTCATCAATGGCCATTTTGTTCATTCCATCTCAGGAAGGACATTTGAGACTATAGATCCAAGAACAGAAGAGGTAATTGGAAGAGTTAGTGAGGGAGATAAAGAAGACATCGATGTTGCTGTTGCAGCAGCACGTCATGCATTTGACCAAGGTCCATGGCCTCGCATGCCCGCCTCTGAAAGGGCAAAAATTATGATGAAATGGGCAGAGCTAATTGATGAAAACATAGAAGAAGTAGCAGCTTTGGATACCATTGATGCTGGAAAGTTGTACTATTTCAACAAGGTTGCAGAAATTCCTTCTGCAACAGATGCTCTACGTTACTATGCAGGTGCTGCTGATAAAATTCATGGCAACGTGTTAAAAATGAACGGTGATTTCCATGCATATACATTAATGGAACCAATTGGTGTTGTGGGACACATAATCCCCTGGAATGCCCCTAGTCTCTCATTTTTCATCAAGGTTAGCCCTTGCCTAGCTGCAGGCTGCACCATGGTCCTCAAGCCTGCTGAACAGACTCCTCTCTCTGCTTTGTTTTATGCTCATCTTGCTAAGCTGGCTGGAATCCCAGATGGAGTACTGAATGTAGTACCTGGATTTGGCCCAACTGCTGGTGCAGCAATAAGCTCACACATGGACATAGATGCGGTCAGTTTTACTGGTTCAGTTGAAATAGGACGTGAAGTAATGCAAGCTGCAGCTAGGAGCAATTTAAAACCAGTTTCACTTGAATTAGGAGGCAAGTCTCCTCTCATTATTTTCGATGATGCTGATATAGACAAAGCAGTGGACCTCGCACTCATTGGCATCATGTCTAACAAGGGAGAAATTTGTGTGGCAAGTTCTCGTGTGTATGTCCAGGAAGGAATCTATGATGAATTTGAAAAGAAGTTGGTGGAGAAGGCAAAAACTTGGGCTGTTGGGGATCCTTTTGATCCCAAATCGTTGCAAGGGCCTCAAGCTGACAAGAACCAACTGAAGAAAATACTTTCCTATATTGAGCATGGAAAGAGAGAGGGTGCCACCCTTTTGACCGGAGGTAACACAGTGGGTAACAAAGGTTACTACATTGAACCCACAATTTTCTCCAATGTCAAGGAGGACATGCTCATAGCACAAGAGGAAATATTTGGCCCTGTATTGGCGTTGATGAAGTTTAAGACAATGGAGGAAGCAATCAAAAGTGCAAACAATACCAAGTATGGTCTAGCAGCAGGAATTGTGACCAAGAACTTAGATACTACAAACACTATGTCAAGATCCATTCGTGCAGGCATTGTTTGGATCAACTGCTATTTTAATGTGGGAAGTGATGTTCCTTTTGGAGGGTACAAGATGAGTGGATTTGGAAGAGATTTGGGATTGGAAGCACTTCACAAATACTTACAAGTTAAATCTGTTGTCACACCTATTCACAATTCTCCTTGGCTTTGA 1515 0.431 MSALSHSSNAHNNSFFTIPTIKFTKLFINGHFVHSISGRTFETIDPRTEEVIGRVSEGDKEDIDVAVAAARHAFDQGPWPRMPASERAKIMMKWAELIDENIEEVAALDTIDAGKLYYFNKVAEIPSATDALRYYAGAADKIHGNVLKMNGDFHAYTLMEPIGVVGHIIPWNAPSLSFFIKVSPCLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDAVSFTGSVEIGREVMQAAARSNLKPVSLELGGKSPLIIFDDADIDKAVDLALIGIMSNKGEICVASSRVYVQEGIYDEFEKKLVEKAKTWAVGDPFDPKSLQGPQADKNQLKKILSYIEHGKREGATLLTGGNTVGNKGYYIEPTIFSNVKEDMLIAQEEIFGPVLALMKFKTMEEAIKSANNTKYGLAAGIVTKNLDTTNTMSRSIRAGIVWINCYFNVGSDVPFGGYKMSGFGRDLGLEALHKYLQVKSVVTPIHNSPWL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00830 504 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 270 277 IPR029510 GO:0016491
Spst3g00830 504 Pfam Aldehyde dehydrogenase family 35 494 IPR015590 GO:0016491
Spst3g00830 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 274 463 IPR016163 GO:0016620
Spst3g00830 504 FunFam Aldehyde dehydrogenase3 274 463 - -
Spst3g00830 504 FunFam Aldehyde dehydrogenase, putative 466 492 - -
Spst3g00830 504 SUPERFAMILY ALDH-like 16 499 IPR016161 GO:0016491
Spst3g00830 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 28 492 IPR016162 GO:0016491
Spst3g00830 504 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 11 494 - -
Spst3g00830 504 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 28 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00830 Spst-Chr3 11798013 11802648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00830 18 504 Aldehyde Dehydrogenase Gene Family AT3G24503 69.057 0.0 716
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00830 3 11798013 11802648 Spst4g02697 4 66863661 66868148 PCT