Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00829 ATGAAGAAGAAAGAAGCATACTCCTCCAATCTAACACTCCTCCTTGTTGCCTTGTCCCTGGGCACACTCTCCTTAACCTGGTGTGGCAATGCGTCCCCTCTGGGCAACGGGGCCCTCACCCAAGCAACGTACATCAAACAACGCCACCTTCTCTACTACAGGGACGAGTTCGGCGACAGAGGAGAGAATGTTAGCGTAGACCCTTCCCTTGCTTTCGAAAATGACCGTCTTAGAAACGCTTATATAGCCTTGCAAGCTTGGAAGCAAGCCATCTTGTCTGATCCCCGTAACCAGACAACAGACTGGGTAGGATCCGACGTTTGCAGTTACACCGGAGTTTACTGTGCATTCGCCCTTGACAACCCTAACATCCGTACCGTTGCAGGCATTGATCTCAACCATGGCGACATAGCCGGTTACTTACCGGAGGAGCTCGGTTTGCTCGTAGATCTTGCTTTATTCCACATCAACTCCAACAGATTCTGCGGCACGGTGCCTCACAAGTTCGACAGGTTGATACTCCTCTACGAGCTCGATCTCAGTAACAACCGCTTCGCGGGGAGGTTCCCTGAGGTGGTTCTGCGCCTTCCTTCGCTCAAGTTCTTGGATCTCAGGTTCAACGAATTCGAAGGAGCTGTGCCCAGGGAATTATTCGACAAAGATCTCGACGCCATTTTCATCAACGACAACCGTTTCGTCTTTGAACTTCCTGACAACTTCGGCAACTCCCCCGTCTCCGTCATCGTCCTCGCCAACAACAGGTTCCACGGCTGCATTCCCGCCAGCCTCGGCAACATGTCCGACCTCAACGAGATCATTTTCATGAACAACGCATTCCGATCCTGCTTGCCCTCCGAGATAGGGTTGTTAAAGAACCTGACGGTGTTCGACGTCAGCTTTAACCAACTTCTTGGTCCCTTACCCAACGCCGTTGGAAACGCTGTGAGCTTGGAGCAGCTCAACGTCGCCCACAACTTACTCTCCGGTAAAATTCCTGCTAGTATTTGTATGTTACCTCACCTTCAGAACTTCACTTACTCCTTTAACTTCTTCACCGGCGAGCCTCCCGCCTGTCTCGCCTTGCCGGCGTTTGACGATAGGGTCAACTGCTTACCGGCCAGGCCTCTGCAGAGGCCTCCGCCGCAATGTCAGGCTTTCTTGTCTAAGCCTGTCGACTGTAACTCCTTTAGGTGTAAACCATTTGTTCCTTCACCTTCACACCCTTCGCCTACGACACCTTCACCACTACCTTCACCTCCATCACCTGGAACGCCTTCACCGTTACCTTCACCTGGAACACCTTCTCTACCTTCACCTCCATCACCTGGAACACCTTCACTGCCTTCACCGTTACCTTCACCTGGAACACCTTCACTGCCTTCACCTCCATCACCTGGAACACCTTCACCTTCACTGCCTTCACCTCCATCACCTGGGACACCTTCCTCTCCATCACCTACACCACCTTCACAACAGCCTACACCTCCATCGCCTGCAACACATCCTTCGCCACCGCATGCAGTGGTGCCTACGCCTCCTTCGGAACCACCGGTGGTGGGACATTCCCCTCCACCACCGGCAGTGGCACCTTCTCCACTACCTCCTGGTCATACTCCTCCTTCTCCAGTGTATTTGCCACCACCACATTCTTCCCCTGCTCCACCTGCCTACACTCCACAACCTCCTCCCCCTTCACAATTGCCGCCTCCATCATACACTCCACCTTCTCCTCATCCAGTGCCACCTTCACCTACTCCAACGCCGCCGTATGGTGTCCACTCTCCGCCGCCACCAAATTCACCATCGCCACCAGCTCCTACATTGTCGACACCACCACCTTCTCATAATTATGGCTCATCGCCACCTCCAACACCTCATCACGCACCCTCACCACATGCTTATCCTTATTTATCACCCCCACCACCTCCCTCCCCTGTTCATTTTCCACCTTCACCACCTTGTACAGAACTTCCTCCACCCCCTCCCCAATCAAGACCTTCTCCCACACCTTATCACCCCCCACCAGCCCCTTCGCACACACCTTATCATCCCCCACCATCTCCATCTCATACACCTTATCACCCACCACCATTTCCATCCCCCCCTCCAACTCCACGGGTTCAATACAGTTCGCCACCGCCGCCGGCATCACCGCCTCCGTGCGAAACTCCACCAGCAGTTTCCCCGCCGCCACCTGTTGTATACTATAACCCACCACCTTCCCCTGTATATGAAGGGCCATTGCCACCTATCGTTGGACTCCCATACGCATCGCCTCCACCACCACCCTTTTATTGA 2298 0.5392 MKKKEAYSSNLTLLLVALSLGTLSLTWCGNASPLGNGALTQATYIKQRHLLYYRDEFGDRGENVSVDPSLAFENDRLRNAYIALQAWKQAILSDPRNQTTDWVGSDVCSYTGVYCAFALDNPNIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFDRLILLYELDLSNNRFAGRFPEVVLRLPSLKFLDLRFNEFEGAVPRELFDKDLDAIFINDNRFVFELPDNFGNSPVSVIVLANNRFHGCIPASLGNMSDLNEIIFMNNAFRSCLPSEIGLLKNLTVFDVSFNQLLGPLPNAVGNAVSLEQLNVAHNLLSGKIPASICMLPHLQNFTYSFNFFTGEPPACLALPAFDDRVNCLPARPLQRPPPQCQAFLSKPVDCNSFRCKPFVPSPSHPSPTTPSPLPSPPSPGTPSPLPSPGTPSLPSPPSPGTPSLPSPLPSPGTPSLPSPPSPGTPSPSLPSPPSPGTPSSPSPTPPSQQPTPPSPATHPSPPHAVVPTPPSEPPVVGHSPPPPAVAPSPLPPGHTPPSPVYLPPPHSSPAPPAYTPQPPPPSQLPPPSYTPPSPHPVPPSPTPTPPYGVHSPPPPNSPSPPAPTLSTPPPSHNYGSSPPPTPHHAPSPHAYPYLSPPPPPSPVHFPPSPPCTELPPPPPQSRPSPTPYHPPPAPSHTPYHPPPSPSHTPYHPPPFPSPPPTPRVQYSSPPPPASPPPCETPPAVSPPPPVVYYNPPPSPVYEGPLPPIVGLPYASPPPPPFY 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00829 765 Pfam Leucine rich repeat N-terminal domain 83 115 IPR013210 -
Spst3g00829 765 MobiDBLite consensus disorder prediction 404 732 - -
Spst3g00829 765 Gene3D Ribonuclease Inhibitor 79 241 IPR032675 -
Spst3g00829 765 FunFam Leucine-rich repeat extensin-like protein 5 243 381 - -
Spst3g00829 765 Gene3D Ribonuclease Inhibitor 242 368 IPR032675 -
Spst3g00829 765 PRINTS Proline rich extensin signature 401 422 - -
Spst3g00829 765 PRINTS Proline rich extensin signature 444 461 - -
Spst3g00829 765 PRINTS Proline rich extensin signature 423 439 - -
Spst3g00829 765 PRINTS Proline rich extensin signature 463 488 - -
Spst3g00829 765 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 50 528 - -
Spst3g00829 765 SUPERFAMILY L domain-like 82 362 - -
Spst3g00829 765 FunFam Leucine-rich repeat extensin-like protein 1 81 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00829 Spst-Chr3 11761176 11763473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00829 40 406 Leucine-rich Repeat extension Gene Families AT3G24480 76.359 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00829 - - vum:124830001 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00829 3 11761176 11763473 Spst3g00829 3 11761176 11763473 ECH