Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00827 ATGGATTTAGAAGAGAAGTTCCTTGCTAAAGCTGCGCAGACCCTCTTTTCTGGTGTTCAAAGCCTTTCATCCAGTGTGCAAAGTACTCCGGAAAAAAATGGCCATTCGGATGGTGCTTCCAAAAGTTCAGAACTCCTTCAGCACTTCTTAAAATGTGGTGCAAAGAAGGAAATTCTTCGAGCATGTTTTGACAAGGACAAAAACATTTCATCGAAAAGCAGGATGACTGAAACTAAGTCATCTGGGAAGTTGATTAAGAAACAAGACACAAAAAAAGTAACTAGTTTCAGCCATCAGCCCTCTAGGAAGCAGCCTCGGAAGGGTGAAAATCCCACTCGACTCTCACCTCCTCCTGATCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATGCTGCCTGTAGGGCAGTTCTGTCTATAGATGACACATTCTGTAGAAGATGCTCTTGCTGTATTTGTCACCTATTTGATGATAACAAAGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTACTCTAGGGGACTCCTGTGGGTTGTCTTGCCATATCGAATGTGCCCTTCTACATAAAAAGGTGGGAGTGGTTGATCATGGGCAACTGATGCAACTAGACGGTGGTTATTGTTGTGCATCCTGTGGGAAAGTTACGGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTAGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTGGATGGAACCTCAAAATTCAAAGACTTGCTTCAAACAGTACAAGAGGCGAAGGCTAAGCTGGAGACAGAAGTTGGTCCTGTCAATGGTGTTTCTGCCAAAATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATATGCAGAAACTCTGCTCACTTGCTATTGATAAAGCTGATAGGTGGCTCGCCTCTGTTCCCAATGTAAATCCAGATTCCACAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTATTTGAAGAGGTAGCAACTTCCTGTGTCAAAATCATTTTAATTGAAATGTCAAATATATATTCCGAGGAGATTAAAGGATACAAGCTCTGGTATTACAAGAGTCGGGATGAATCACCCACTAAAGATCCTGTTTCCGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATCATATCTTATACAGATACACGTGACCTGGGTCATTCTGAGGCCAAGTGTTTCACTAAGAGCATCGAGGTAATTAAAAACAACCGCTCGTCATCTGTAGCTATGAATCATGAAAAAGAAAACCTTCTATCTAGGGAAAATTCTTCGGGCTCCAAGATGGTGCCAAATGCCTCAATGGACAGTTATGGATTCAAGGTACGAGACCTTGGGAAAATATTGCGTCTTGCTTGGGCTCAAGAGCAAGGTTACTTGGAAGAGTTTTGCTGTGCCAATAATATGAAAAATTGCTGTGGACAGAGTGAAATGTTGGTTAAGCCAAGAATTCCAGAAGTACAGTTGCCCTCAGTTTCTCGAGACCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCAAACTGTGGAGGGAGACGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCCCAAACCTGGACCCATGGGCCAACAGGAGAAGTATCTGCTGTTGATTCACGCATAGATATGTTCAGAAAAAGGATAGCAAGCACAATGGAAGAGACACATGATTGTGACAGCACTTTGATAAACGGTTCTCCTTTACGTATATCTGATGGTTCAGGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTGGAATGTGAGGGTCACATCAAACAAGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATGGATGATCCAAATAGTTTGGCAGGACAACTGGTAGACTCTTTTTCTGATATTATATCAAACAAGAGGCAAAAAAATGGATTCAGTAGTAAAGCTGGGGCATCAAATTAA 2181 0.4204 MDLEEKFLAKAAQTLFSGVQSLSSSVQSTPEKNGHSDGASKSSELLQHFLKCGAKKEILRACFDKDKNISSKSRMTETKSSGKLIKKQDTKKVTSFSHQPSRKQPRKGENPTRLSPPPDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTLGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLLQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDMQKLCSLAIDKADRWLASVPNVNPDSTEGSLPAACKFVFEEVATSCVKIILIEMSNIYSEEIKGYKLWYYKSRDESPTKDPVSVFPKSQRRILISNLKPCTEYTFRIISYTDTRDLGHSEAKCFTKSIEVIKNNRSSSVAMNHEKENLLSRENSSGSKMVPNASMDSYGFKVRDLGKILRLAWAQEQGYLEEFCCANNMKNCCGQSEMLVKPRIPEVQLPSVSRDLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQTVEGDDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRIDMFRKRIASTMEETHDCDSTLINGSPLRISDGSGSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPNSLAGQLVDSFSDIISNKRQKNGFSSKAGASN 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00827 726 Gene3D Immunoglobulins 353 429 IPR013783 -
Spst3g00827 726 PANTHER VIN3-LIKE PROTEIN 2-RELATED 22 721 IPR044514 GO:0010048|GO:0040029
Spst3g00827 726 ProSiteProfiles Fibronectin type-III domain profile. 331 430 IPR003961 GO:0005515
Spst3g00827 726 SUPERFAMILY Fibronectin type III 341 413 IPR036116 GO:0005515
Spst3g00827 726 MobiDBLite consensus disorder prediction 73 93 - -
Spst3g00827 726 CDD FN3 361 412 IPR003961 GO:0005515
Spst3g00827 726 MobiDBLite consensus disorder prediction 73 124 - -
Spst3g00827 726 MobiDBLite consensus disorder prediction 574 594 - -
Spst3g00827 726 Pfam PHD - plant homeodomain finger protein 132 250 IPR032881 -
Spst3g00827 726 MobiDBLite consensus disorder prediction 579 594 - -
Spst3g00827 726 MobiDBLite consensus disorder prediction 19 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00827 Spst-Chr3 11723231 11729936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00827 128 717 PHD Gene Family AT3G24440 48.270 7.05e-174 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00827 - - gmx:100816128 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00827 3 11723231 11729936 Spst3g00827 3 11723231 11729936 ECH
Spst3g00827 3 11723231 11729936 Spst4g02709 4 66970660 66975659 PCT