Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00810 ATGTTGTGGCTTAGAATGCAAAACTCTGAGATGGAATCTTTGAAACAAGTTTCTGAAGAAAGAAAACTCCGAATTTCATGCACTGACCCAGATGCTACAGATAGTGAAGAAGACAGTGAAGTATCAAACGGAGACACTAAAAGCAACAAGAGATTTGTCGTAGAGATGAAGTTTCCAAGCATGTTAGATGAGTCAAACAAAGAACCTCACACCAAAAAGGAAAAACGCACCTCATCATCCACCATGTCTAAAGGTGTAAGACTGAGACCATGGGGAAAATATGCAGCTGAGATACGAGTCCCTTTTGAAAACCGCCGAGTATGGCTTGGTACTTTTAATACCGAGGAAGAGGCTTCAATTGCTTACAATAAAAAGAGGGAAGAGTTTGACAAGAAAAAGGCTCTTCTAAAAGGAGATGCATCGGGGCATTCAGAGGGTGCCAAAAATGATTTTGCTCATCATCCTTCTCAACCATTTTAG 480 0.4062 MLWLRMQNSEMESLKQVSEERKLRISCTDPDATDSEEDSEVSNGDTKSNKRFVVEMKFPSMLDESNKEPHTKKEKRTSSSTMSKGVRLRPWGKYAAEIRVPFENRRVWLGTFNTEEEASIAYNKKREEFDKKKALLKGDASGHSEGAKNDFAHHPSQPF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00810 159 SUPERFAMILY DNA-binding domain 83 133 IPR016177 GO:0003677
Spst3g00810 159 MobiDBLite consensus disorder prediction 61 80 - -
Spst3g00810 159 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Spst3g00810 159 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Spst3g00810 159 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Spst3g00810 159 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 134 - -
Spst3g00810 159 Pfam AP2 domain 84 129 IPR001471 GO:0003700|GO:0006355
Spst3g00810 159 Gene3D AP2/ERF domain 84 137 IPR036955 GO:0003700|GO:0006355
Spst3g00810 159 MobiDBLite consensus disorder prediction 136 159 - -
Spst3g00810 159 SMART rav1_2 84 145 IPR001471 GO:0003700|GO:0006355
Spst3g00810 159 MobiDBLite consensus disorder prediction 15 86 - -
Spst3g00810 159 MobiDBLite consensus disorder prediction 136 150 - -
Spst3g00810 159 MobiDBLite consensus disorder prediction 15 31 - -
Spst3g00810 159 CDD AP2 84 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00810 Spst-Chr3 11557423 11557902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00810 47 137 AP2-EREBP Transcription Factor Family AT1G49120 48.421 3.22e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g00810 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00810 - - vun:114178173 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02735 4 67211069 67212028 Spst3g00810 3 11557423 11557902 PCT