Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00808 ATGAGAGACATGAAAGACGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCAGCTGATGATGCTTTTCTCTGCCATGGTTGCGACACTTTGGTTCATTCAGCGAACCAATTAGCTAGCAGACACGAAAGGGTTCGGCTTCAAACTGCGTCCTCTAAGGTAACCACCACAACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAGCAAGCACTTTGCACTGCAACAGCGTCTCAAAGAAGAAGTTCTCTTCTACAACAGCAGTGTTCTTCCCCTGGTGCCAGAGCTTGGAGGGGAAGAACAAGAACCTGTAGCTGTGGATAGTGATGAGGCGGAGGAACAGATGATATGTCGCGTGCCTGTGTTGGACGATTTTGATGTGAGAACAGATGACTTGGACAGTTTTTCTGACATGGATTTCGCTGAGTTTGCTGCTGATGTTGAAAACCTACTTGATAAAGAAGACAATGAAATAAGTGCGTGTGTGGGAGGGGAAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAAGAAGTTGATGGTGATGTAGCGTGTTATCTGGAATCAGTTTTTGACATGACGAATGATGATGCCTTTCATTGGAATAGCATTGAGTCTGTGCTGTCAGATGCACGTGAAGAGAAGGAGTGTGTTGCGGCGAGTTATGGTGCTGTTGAAGAGGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTTAACTATGATGAGGTTATTACTGCATGGTCTAGCCAAGGTTCTTCTCCATGGACAACTTCACACCCACCTAAGTTCAACTCTGATTATGACTTCTGCTTGGGTTTGAGCGGTGTAGATGGGGAAGTAAGAAGCTTAAGGGGTCACCTAGATGGGGGAAGAGAAGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATTAGATACGAAGTAAGGAAGTTGAACGCTGAGAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTTGGAGCCAATGCTTTTCCTGCATACCAATGA 1107 0.4661 MRDMKDAGALGAKTARACDSCISRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTTHAWHSGFTRKARTPRHNNSKHFALQQRLKEEVLFYNSSVLPLVPELGGEEQEPVAVDSDEAEEQMICRVPVLDDFDVRTDDLDSFSDMDFAEFAADVENLLDKEDNEISACVGGEVQGAMAKVKDEEEVDGDVACYLESVFDMTNDDAFHWNSIESVLSDAREEKECVAASYGAVEEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSHPPKFNSDYDFCLGLSGVDGEVRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00808 368 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Spst3g00808 368 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Spst3g00808 368 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Spst3g00808 368 CDD Bbox1_BBX-like 17 60 - -
Spst3g00808 368 Pfam CCT motif 313 355 IPR010402 GO:0005515
Spst3g00808 368 SMART bboxneu5 13 60 IPR000315 GO:0008270
Spst3g00808 368 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00808 Spst-Chr3 11549628 11551095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00808 7 355 C2C2-CO-like Transcription Factor Family AT1G25440 43.059 6.39e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst3g00808 zf-B_box 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00808 - - vun:114176987 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00808 3 11549628 11551095 Spst4g02737 4 67225037 67227389 PCT