Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00803 ATGGAAGAAAGCCTACCTCCTGGGTTCAGGTTCCATCCTACAGATGAAGAACTCATCACATATTATTTGTTAAGGAAAGTGTCTGATATTAGCTTCACATCCAAGGTTGTAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGGAAGGCTTCGATGGGGGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGGAAATACCCAACAGGGCTGCGAACGAACCGAGCGACAGAATCAGGGTACTGGAAAACGACAGGAAAAGATAAGGAAATATTTGGAGGTGGAGTTTTGATTGGGATGAAGAAAACTTTAGTCTTTTACATGGGTAGAGCTCCCAGGGGGGAGAAAAGTAACTGGGTTATGCATGAATACAGGCTTCAACACAATCAACCCTTTAGATCTTCTAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAAAAGAGCTCAGCACCAAAGAAACCACAGCAGACATCATCCTCCCAACCATCTCAAGAGTCCCCTACCTCAATGGTCAATGAATTTGGTGATGTTGACCTACCAAATCTTAATACCATTGCAAATTCATCTAGTAGCTACACCAACATTGCAGGACAAACTTACAACAATGCTGCAGACCCCAGCAATGTTTGCACAAACATGAACTTGGCCATGAATTGGCCTTCTGCAACTGAGGTTCCATCTCTCCCATGGCCTTCTGGATTATTGCTGAATCCCAACCTATCTGTCAATTCGTTGCTTCTCAGGGCATTGCAGCTTAGGAGTACTTTTCCTCAAAGAGAACCTGCAACTAGTGATCACTTTGCAACATATGTTCCTCAAACACTTCATAATATTGGAACTGATAATCTCACTCCAAATCTCAGTGTCTCAGCTTCTTCCAAAGCTTTAGAGTCTTGTGTGCCGCAGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 954 0.435 MEESLPPGFRFHPTDEELITYYLLRKVSDISFTSKVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQHNQPFRSSKEEWVICRVFQKSSAPKKPQQTSSSQPSQESPTSMVNEFGDVDLPNLNTIANSSSSYTNIAGQTYNNAADPSNVCTNMNLAMNWPSATEVPSLPWPSGLLLNPNLSVNSLLLRALQLRSTFPQREPATSDHFATYVPQTLHNIGTDNLTPNLSVSASSKALESCVPQQEQPFNMDSIW 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00803 317 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Spst3g00803 317 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Spst3g00803 317 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 205 - -
Spst3g00803 317 MobiDBLite consensus disorder prediction 154 175 - -
Spst3g00803 317 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Spst3g00803 317 MobiDBLite consensus disorder prediction 154 178 - -
Spst3g00803 317 FunFam NAC domain-containing protein 100-like 14 155 - -
Spst3g00803 317 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00803 Spst-Chr3 11509067 11510632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00803 1 317 NAC Transcription Factor Family AT3G18400 55.015 1.99e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g00803 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00803 - - gmx:100775645 487.263