Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00798 ATGGCCGAATTCACTGCAGATTTGCAAAGCTTTAGACCCTCCTTTCCTTTCTTAGACATCGATAACATGGAAATTCAGAACTTGGTGCCATTTGACAGCTTATTGGGCTCTCCAGAACCTGAATTTCCAGGAAACTTGGAAGAATTTTTTCCGGGTCTTTTTCAATGTGTGGATCACAATGTAGCTCCAGTGTTAGTTCCTATTAGTTCAGAAAAAAATGAAGTCCATGAATATAAAAAGAGGGAAGCAACTGATATGTGTGATCCCAGTTCTGGTAACTCAACCCCTGATATTTCTGAGAGTGGAAGCAAGACAAAAAATAGTACAGGAAGAAACAAGAGAGTAAAGAGGAATGTTGTAGAAGACAAGAAACCAAACCAAGTAGTTCATGTTAGAGCCAAAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTACAGAACATTGTCCCAGGATGTTACAAGACCATGGGTATGGCAATAATGTTAGACGAGATCATAAATTATGTGCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCTATGAAGCTTAGTGCAGCAAGTACCTATTATGACTTCAATTCAGAGTCAGATGCTTTAGAAACAATACAGAGAGCAAAGGCATCCGAGGCAAAAGAGTTAGGGAATTATGTAAGAGAAGGAAGTGAAGGAGTTTCTTGCTTTGAAGCAGCATGGCCTTGGTCTCTGTAA 753 0.3997 MAEFTADLQSFRPSFPFLDIDNMEIQNLVPFDSLLGSPEPEFPGNLEEFFPGLFQCVDHNVAPVLVPISSEKNEVHEYKKREATDMCDPSSGNSTPDISESGSKTKNSTGRNKRVKRNVVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLSAASTYYDFNSESDALETIQRAKASEAKELGNYVREGSEGVSCFEAAWPWSL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00798 250 MobiDBLite consensus disorder prediction 87 108 - -
Spst3g00798 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 205 IPR036638 GO:0046983
Spst3g00798 250 Gene3D - 134 206 IPR036638 GO:0046983
Spst3g00798 250 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 78 213 IPR024097 GO:0006355
Spst3g00798 250 MobiDBLite consensus disorder prediction 81 120 - -
Spst3g00798 250 CDD bHLH_AtBPE_like 128 212 - -
Spst3g00798 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
Spst3g00798 250 SMART finulus 143 193 IPR011598 GO:0046983
Spst3g00798 250 FunFam transcription factor BEE 3-like 134 205 - -
Spst3g00798 250 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00798 Spst-Chr3 11478746 11480366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00798 1 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 45.652 3.03e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g00798 HLH 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00798 - - gmx:100777160 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00798 3 11478746 11480366 Spst3g00798 3 11478746 11480366 ECH