Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00795 ATGGCCATGTCTACTTCAAAGAGCGTCAGCAGTTCTAGTGAAGATGACAATGAACTTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATACATTTCTGATCATGGGGAAGGGCGATGGAACTTTCTGGCGAAACGTTCAGGATTAAAGAGAACTGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTAAAACGGGGAAATTTAACCCCACAAGAGCAACTTTTAATTCTTGAACTCCATTCAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAACATTTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACTAGGATTCAGAAACAAGCAAGACATTTGAAAATAGACACTGACAGCAGAGAGTTTCAAGAACTTGTAAGGCGTTTCTGGATGCCAAGGTTGCTTCAGAAAGCAAAAGAGTCATCTTCTTCCTCAGCCATGTCAATTGAAAACCAAGAAATTCCTTTGCCGCTTGTTGATGGTGCTTCACAACATTCAACTGTTGGGACCATACCATGGCAGGGACCTTGTATGAGTATGAATGAAGCTGGTCCCACTCATATGGACCAACATGAGCAGAACTCAGACTCTGAGCACAACAATGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATTGCAAAAGTGTCTCAGCAATTTGGACACACCATCAACCAATTCCATTCTTCAAGCAACGATGACTTTGGCACCTTCACATATGATGGTCATCATGTAAACAACAATGCCTTTGAGATGAACACCTTTAAAACAACAACTGCAAGGGTGGCTGAGGATGTGCAATACCTAATTGGTGATTGTCAAATGGAAGGAAGCAATTGGGTAAGCAACGATTTTGCATGTAACATGTGGAACATGGATGAATTGTGGCACTTTAGCAAGTTACAAAAAAAAGATTTTTAG 960 0.4094 MAMSTSKSVSSSSEDDNELRRGPWTLEEDNLLSQYISDHGEGRWNFLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTDSREFQELVRRFWMPRLLQKAKESSSSSAMSIENQEIPLPLVDGASQHSTVGTIPWQGPCMSMNEAGPTHMDQHEQNSDSEHNNGSCISFSESANIAKVSQQFGHTINQFHSSSNDDFGTFTYDGHHVNNNAFEMNTFKTTTARVAEDVQYLIGDCQMEGSNWVSNDFACNMWNMDELWHFSKLQKKDF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00795 319 Gene3D - 21 73 - -
Spst3g00795 319 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g00795 319 CDD SANT 78 117 IPR001005 -
Spst3g00795 319 FunFam MYB transcription factor 77 119 - -
Spst3g00795 319 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 221 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst3g00795 319 CDD SANT 23 68 IPR001005 -
Spst3g00795 319 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Spst3g00795 319 Gene3D - 77 120 - -
Spst3g00795 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Spst3g00795 319 MobiDBLite consensus disorder prediction 196 217 - -
Spst3g00795 319 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Spst3g00795 319 FunFam Myb transcription factor 21 73 - -
Spst3g00795 319 SMART sant 73 121 IPR001005 -
Spst3g00795 319 SMART sant 20 70 IPR001005 -
Spst3g00795 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Spst3g00795 319 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Spst3g00795 319 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Spst3g00795 319 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00795 Spst-Chr3 11470733 11472114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00795 16 159 MYB Transcription Factor Family AT1G68320 75.000 1.33e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g00795 Myb_DNA-binding 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00795 K09422 - gmx:778042 538.88