Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00787 ATGGCGACGCCGTTGGACGGAGGAGGAGTGGCAGTGCTTCCAAATTCCGTCAGTAACGTGGACTCCGCCTCGCCTCTCAACGACGGCTTGAAGTGCTCGAAACCAGAGTCGCCGATTTTTATTTTCTTGTTCTTTCACAAAGCGATTCGGAATGAGCTTGATGCGCTGCACCGCTTGGCCATGGCATTCGCCACTGGAAACCGGTCCGACATTCAGCCGCTCTCCGAGCGCTACCATTTCCTCATCTCCATGTACAGGCATCACTCCAATGCTGAAGACGAGGTGATATTTCCAGCTCTAGATATACGCGTGAAGAATGTAGCACAGACATATTCTCTTGAGCACAAGGGTGAAAACAACCTTTTTGATCATCTATTTGAGCTTTTAAATTCTTCTATCAATACTGATGAAACTTTTCCAAGAGAGTTAGCATCCTGCACCGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCAAAGGAAGAGGAGCAGGTATTTCCTCTTCTTATTGAGAAGTTTTCTCTTGAGGAACAGGCATCCTTGGTTTGGCAGTTCCTTTGCAGTATTCCTGTGAATATGATGGCCGAATTTCTTCCATGGCTTTCAACATCTCTGTCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATGAAGATAGTGCCACAGGAGAAGCTTATTCAGAAGGTTGTTTTCACCTGGATGGAAGGAAGAGGTAGCGTTAACAAAGTTGAAAGTTGTGTAGATCATTCTCAATGTAGTTCTAGGTCGTTACCCCATCAGGTTGAGAAAGTAAACTGTGCTTGTGAATCCACAACATGCGGAAAAAGGAAATATTCAGGACCTGTGATAGAGGTTTCTGATACCACTGGAACTCATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGAATTAAGTGAGATAGCAGAGGAGGCCAGAAAGATACAACACTCTGGAGATTTTACTAATCTGTCTGCTTTTAATGAGAGATTTCAATTCATAGCCGATGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGCGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGATGTTGAGTTTTACTCCAAATTATGTGCACATGCTGATCATATAATGGAAACCATACAGAGACATTTCCACAATGAAGAAGTTCAGGTTCTTCCTCTGGCAAGAAAGCACTTTAGCTTTAGAAAGCAATGTGAACTTTTGTATCAAAGCTTATGCATGATGCCTTTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAGATGAAGCAAAGATGTTTCAGAGAAATATGCAATTGGCAGCGCCAGCAACCGATTCTGCTTTAGTTACACTCTTCTGTGGATGGGCATGCAAGGCTCGTAACGAAGGTCTGTGTTTGTCTTCTGGTGCATCAGGTTGCTGTCCTGCCCAAAGACTTTCTGATATTGAAGAAAATATTGATCGACCATCTTGTGCTTGTGCATCTGCATTATCTAATAGACATTGCTCAGTATTAGCTGAATCAGGAGGGAGCAAAAGAGCAGTCAAACGAAACATGCTGGAGTTGCACAAAAATGAAGATGGGCTAGAAAATTCAGAGACTGAAAGCATTCAGAAACAATGTTGTAGTACACGGTCTTGTTGTGTGCCAGGCTTGGGAGTAAGTAGTAACAATTTAGGGCTGAGTTCTCTCTCTACAGCCAAGTCCTTGCGCTCCTTGTCTTTCAGCTCTTCTGCCCCATCTATTAATTCCAGCCTTTTCATATGGGAAACAGAGAGCAACTCATGCAATGTAGGATGTACAGAAAGACCAATTGATACAATATTTAAATTCCATAAAGCGATACGCAAAGACTTGGAGTATCTTGATGTTGAATCAGGTAAGCTGAGTGATGGTGATGAGACAATTCTTCAGCAATTTAATGGAAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTGGAATCCAAAGAAGCACTTCATAACGTGAGTCATTCATATATGCTAGATCATAAGCAGGAAGAAAAATTGTTTGAAGATATTTCCTGTGTTCTTTCAGAGTTTTCTGTCCTTCATAAATCATTGCCGATGACCTACTTGCCTGAGAATTTAAGTGAAAGTAATTATGGAACCTCGGATGGCAATACTGGTGATGTCTTAAAATATTATAATCAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATCTCTTCAGAGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTCACCGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACAACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACATCTGCACTTACTCAGGATGAGCAAAACAAAATGATGGATACATGGAAGCAGGCAACAAGGAACACTATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGTCTATAGCAGAGACAGAATCATCAGATCATAGCACTTCTCGGAGAGGTGCTGAATATCAAGAAAGCTTGGATCACAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAACCAGAATGAACTAGAGTCAGAGATCCGGAAGGTATATCGAGACTCAACACTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTATTGACAAGTCGATGGATAGCTGCCCAGCAGAAATCACCTAAAGCACTCTCCGAAGAATCATCTAACAGTGTAGAAATAGAAGGACTCTCACCATCATTTCGAGAACCCGAGAAACACGAATTTGGGTGTGAACACTATAAGAGAAATTGCAAGCTTCGGGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGTGATCACTCTATGGATAGAAAAAAAACAATGGAAATGATGTGCATGCGCTGCCTGAATGTACAGCCAATAGGGCCTATGTGCGTGACACCTTCATGTAATGGATTTTCAATGGCGAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAACGTATATCATTGCCCATTTTGCAATTTATGTCGTGTTGGACGAGGGCTCGGGATAGATTATTTCCATTGCATGAAATGCAATTGTTGCCTGGGGATTAAATCAGCATCTCATAAATGTCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGTGATGACTTGTTCACTTCAAGTGCTACGGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACGTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATAAGGACCGCTGTCAGGACATACTCTGCCATGACTGTGATGGGAAGGGCTCTTCACGCTTCCACTGGTTGTATCACAAATGTGGCTTCTGTGGGTCTTACAATACTCGGGTTATCAAGTGTGAGACGTCAAACTCCAGCTGTTCTTAG 3705 0.4197 MATPLDGGGVAVLPNSVSNVDSASPLNDGLKCSKPESPIFIFLFFHKAIRNELDALHRLAMAFATGNRSDIQPLSERYHFLISMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGENNLFDHLFELLNSSINTDETFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSLSPDESQDLRNCLMKIVPQEKLIQKVVFTWMEGRGSVNKVESCVDHSQCSSRSLPHQVEKVNCACESTTCGKRKYSGPVIEVSDTTGTHPIDEILLWHNAIKKELSEIAEEARKIQHSGDFTNLSAFNERFQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRRLIESIQSEGASSNSDVEFYSKLCAHADHIMETIQRHFHNEEVQVLPLARKHFSFRKQCELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFQRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSGASGCCPAQRLSDIEENIDRPSCACASALSNRHCSVLAESGGSKRAVKRNMLELHKNEDGLENSETESIQKQCCSTRSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFSSSAPSINSSLFIWETESNSCNVGCTERPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILQQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSEFSVLHKSLPMTYLPENLSESNYGTSDGNTGDVLKYYNQLATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATRNTMFNEWLSECWKESPVSIAETESSDHSTSRRGAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKALSEESSNSVEIEGLSPSFREPEKHEFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKKTMEMMCMRCLNVQPIGPMCVTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYKDRCQDILCHDCDGKGSSRFHWLYHKCGFCGSYNTRVIKCETSNSSCS 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00787 1234 Pfam Zinc-ribbon 1165 1222 IPR039512 -
Spst3g00787 1234 FunFam Zinc finger protein-related isoform 1 1113 1162 - -
Spst3g00787 1234 SUPERFAMILY RING/U-box 1116 1163 - -
Spst3g00787 1234 Gene3D - 1189 1230 - -
Spst3g00787 1234 ProSiteProfiles Zinc finger CTCHY-type profile. 1054 1117 IPR017921 -
Spst3g00787 1234 Pfam Ring finger domain 1117 1159 IPR001841 -
Spst3g00787 1234 ProSiteProfiles Zinc finger CHY-type profile. 982 1051 IPR008913 GO:0008270
Spst3g00787 1234 CDD RING-H2_Pirh2-like 1117 1160 - -
Spst3g00787 1234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1162 IPR013083 -
Spst3g00787 1234 CDD Hr-like 41 167 - -
Spst3g00787 1234 ProSiteProfiles Zinc finger RING-type profile. 1118 1160 IPR001841 -
Spst3g00787 1234 Pfam CHY zinc finger 989 1064 IPR008913 GO:0008270
Spst3g00787 1234 SMART ring_2 1118 1159 IPR001841 -
Spst3g00787 1234 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 685 1231 - -
Spst3g00787 1234 SUPERFAMILY CHY zinc finger-like 983 1045 IPR037274 GO:0008270
Spst3g00787 1234 Gene3D nmb1532 protein domain like 296 443 - -
Spst3g00787 1234 Gene3D nmb1532 protein domain like 36 187 - -
Spst3g00787 1234 Gene3D nmb1532 protein domain like 639 879 - -
Spst3g00787 1234 CDD Hr-like 296 425 - -
Spst3g00787 1234 CDD Hr-like 644 804 - -
Spst3g00787 1234 Pfam Hemerythrin HHE cation binding domain 642 805 IPR012312 -
Spst3g00787 1234 Pfam Hemerythrin HHE cation binding domain 293 427 IPR012312 -
Spst3g00787 1234 Pfam Hemerythrin HHE cation binding domain 41 169 IPR012312 -
Spst3g00787 1234 SUPERFAMILY Zinc hairpin stack 1055 1111 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00787 Spst-Chr3 11409767 11418066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00787 1 1234 C2H2 Transcription Factor Family AT3G18290 66.773 0.0 1676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00787 K16276 - gmx:100801725 2340.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00787 3 11409767 11418066 Spst3g00787 3 11409767 11418066 ECH
Spst3g00787 3 11409767 11418066 Spst4g02757 4 67366132 67376046 PCT