Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00782 ATGCCAGGCTTCACCTTTCATATCACTCCAACTTTTCCATCCATCCATGTAACCATGACCACCCCTTCCTCCTTCCTTGCATCCATACTCGCCCTTGCTTTCTTCTTTGCAACTTTGCCACAATCCTACTCTCAAGAGAACAACACGTACACTATTTGCAGCCAATCTTTCAGTTGTGGGACTCTCACAAACATATCCTATCCTTTCTGGGGAGGGAACCGACCCCAGTTTTGTGGCCGCAATGGCTTCAAGCTAACGTGCATGCATAACCAAAACACTTCGGTTCAAGTTGGTTCCCTAAACTTCCATGTACTACACATTAACCAAACGGCTTCCACCATGAGAATGGTGCGAACAGACCTTGTTTATGATCGCTGCTCTTCCAATTTCACTAACACTTCTCTAAGTGCCAGTCCCTTTAGTTTTCTCCCCACTGTTCAAAATGTCACTGTATTCTACGAATGCCCCTCTGACAATTCTGTCGTGGGGAACAACTTTACGTGCCAGAACGATAGAAATAAACACGCTTTCTATGTGGTCAACGGAACTCAGCTGAAGCAGTTCCCAGGCCTTCAGAAGTGTGAGATTAGCGTTCTTGTGCAGGTTTCACATGATGTTGTGTGGGGTTCTGAGAATGGAATTGAGGCGCTTAAGAAAGCGTTAGGTCAAGGTTTTGATGTGACGTTTGATGCAGAGTGGAGTTCTCAGTGTAAAGCATGCAGGAATTCTGGAGGAGCATGTGGAACGAATGAGAATGATTCGGCTCAGTTTTCTTGCCATTGCTCGGGCGGAACTCGCGGTTCAGTGTGCTCTGATCACAAAAGTGGAAGGAAGAGCAGAGTGTTGAAGCTGGTTTTAGGTTTCGTTGCTACTGGATTTGCACTACCTCTAATCGCTGTCATCATATGCCGCAACAAAGCAAGAATTTGGAAATTTATATTAATACAATTTGGCAAGATAAAAAAGAATGATCGAGTTATAGAAGCCTTCCTTGAAAGCCAAGGTTCTATGGGTCTAAAGAGATACAGTTTCTCTGATGTCAAGAAAATGACCGACTCCTTAAAAATTAAACTGGGGGAAGGTGGTTATGGTTCTGTTTACAAAGGAAAATTATTCAACGGTTGCTCAGTGGCAGTGAAGATACTGAACGAAACAAAAGATAATGGCGAAGAGTTTATCAATGAGGTTGCTAGCATAAGCAAAACATCCCACGTTAATATTGTCTCTCTCCTTGGATTTTGCCTCGAAGGAAGCAGAAAAGCCCTCATCTATGAGTTTATGTCCAATGGTTCACTTGAGAAGTACATTCACAAGAAAACAGCAGAAAAAAAAAAAACTGCTACTCCATCCTTGAGTTGGGACAGATTGCACCAGATTGCAATAGGCATAGCTCGAGGACTTGAGTACTTGCATAAAGGATGCAACACTCGGATTCTGCATTTTGACATTAAGCCACATAACATCCTCTTGGATGAAACTTATCGCCCAAAGATATCAGATTTTGGGCTTGCTAAGCTTAACACAAGAGATGAAAGCATCATATCAATGTCGAATGCTAGAGGGACAGTGGGGTACGTGGCTCCTGAAGTGTTCAATACAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTACGGAATGATGCTGCTAGAAATGGTTGGAGGACAGAAGAACATCAACGTTGAAGCCAGTCGCTCAAGCGAACTATACTTCCCACAATTGGTTATCTACAAGAAGCTTGAGCAGGGCAATGATTTGGGACTTAAAGGGATATTGTCTGGTGAGGAAAATGAGATAGCAAAGAGAATGACTTTGGTGGGTTTGTGGTGCATCCAAACAATTCCATCTCACAGACCTACCATAAGTAGAGTGATTGAAATGTTGTTAGGTAGTGTGGATTCCTTGGAAATGCCACCAAAACCTTTCCTCTCTTCTCCTCCAAGATCAACCACAGATTTTTCCACTGCAATATCCCAATCATTTGGTAGTGTCTGA 2001 0.4298 MPGFTFHITPTFPSIHVTMTTPSSFLASILALAFFFATLPQSYSQENNTYTICSQSFSCGTLTNISYPFWGGNRPQFCGRNGFKLTCMHNQNTSVQVGSLNFHVLHINQTASTMRMVRTDLVYDRCSSNFTNTSLSASPFSFLPTVQNVTVFYECPSDNSVVGNNFTCQNDRNKHAFYVVNGTQLKQFPGLQKCEISVLVQVSHDVVWGSENGIEALKKALGQGFDVTFDAEWSSQCKACRNSGGACGTNENDSAQFSCHCSGGTRGSVCSDHKSGRKSRVLKLVLGFVATGFALPLIAVIICRNKARIWKFILIQFGKIKKNDRVIEAFLESQGSMGLKRYSFSDVKKMTDSLKIKLGEGGYGSVYKGKLFNGCSVAVKILNETKDNGEEFINEVASISKTSHVNIVSLLGFCLEGSRKALIYEFMSNGSLEKYIHKKTAEKKKTATPSLSWDRLHQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLNTRDESIISMSNARGTVGYVAPEVFNTSFGGVSHKSDVYSYGMMLLEMVGGQKNINVEASRSSELYFPQLVIYKKLEQGNDLGLKGILSGEENEIAKRMTLVGLWCIQTIPSHRPTISRVIEMLLGSVDSLEMPPKPFLSSPPRSTTDFSTAISQSFGSV 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00782 666 Gene3D Transferase(Phosphotransferase) domain 1 427 639 - -
Spst3g00782 666 Gene3D Phosphorylase Kinase; domain 1 328 426 - -
Spst3g00782 666 SMART serkin_6 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00782 666 Pfam Protein tyrosine and serine/threonine kinase 355 630 IPR001245 GO:0004672|GO:0006468
Spst3g00782 666 SUPERFAMILY Protein kinase-like (PK-like) 333 630 IPR011009 -
Spst3g00782 666 Pfam Wall-associated receptor kinase galacturonan-binding 53 118 IPR025287 GO:0030247
Spst3g00782 666 FunFam serine/threonine-protein kinase PBS1-like 321 426 - -
Spst3g00782 666 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Spst3g00782 666 ProSiteProfiles Protein kinase domain profile. 352 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00782 666 FunFam PR5-like receptor kinase 427 642 - -
Spst3g00782 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Spst3g00782 666 Pfam Wall-associated receptor kinase C-terminal 169 263 IPR032872 -
Spst3g00782 666 PANTHER RUST RESISTANCE KINASE LR10-RELATED 324 648 IPR045874 GO:0004672
Spst3g00782 666 ProSitePatterns EGF-like domain signature 1. 259 270 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00782 Spst-Chr3 11375560 11378929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00782 15 643 Receptor kinase-like Gene Family AT5G38260 39.907 1.86e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Spst3g00782 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00782 - - vra:106766588 1170.99