Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00780 ATGGATAAGCTCTTTTTCAACTGTTTCATTGGATACTGTCTTCTTTATTCTCTCTGGGTTGTGCATGGCAAACAATTGTCTTGCAATGAAACCCCCTACCCCGGTGTGTGCAAACATTACGTTGACACTACCAACACATTATCAACCCTTGATGCTTCATCCTCTTCCTTCCATGATATGGCCCTTAAGGTCAGCATGGAGCAAGCCATGGAGGTTTATAAACTTGTCTCCAACATGGACTTGAATAATTTCAAGGACAAGCAATCCAAGTCGGCTTGGGAAGATTGTTTGGAGCTGTATGAGGACACACTTTATCAGCTCAAACGCTCAATGAACTCAAACAATCTAAATGACAGGTTGACTTGGCAAAGTGCATCCATTGCCAATCATCAAACATGCCAAAATGGCTTCACTGAACTCAACCTGCCCTCTCACCTAAACTATTTCCCCTCCATGTTAAGCAACTTCTCTAAACTGCTTAGCAATTCCTTGTCCATTAGCAAGGCTATGACATTGACATCATTGTCATCGACTAAACAAAATGGTGGTCGAAGGCTGCTTTCAGGTGGCTTCCCCTCTTGGCTTTCACATTCAGATAGAAGGCTTCTTCAGGAAACAACATCGAAAGCTGATGTTGTGGTGGCACAGGATGGGAGTGGAAACTATAAGACCATCTCTGAGGGTGTGGCTGCAGCTGCCAAGCTCAGTGGAAAAGGGCGTGTTGTGGTGCACGTCAAAGCTGGTGTTTACAAAGAGAGTATTGATATCAAGAGGACTGTGAAGAACTTAATGATCATTGGAGATGGAATGGGTGCTACTGTTGTTACTGGTAATGATAACGTGCAAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGGTAAGTTCGTCGTGAACTCATCGGTTTCTGGTGATGGCTTCATTGCTCGGGATATTACCTTCGAGAACACCGCCGGACCGCAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCGGACCACTCGGTGTTCTACAGGTGCAGCTTTAAGGGGTACCAAGATACCTTATACGTCTACGCCAACCGCCAATTCTACCGTGACTGTGACATATACGGAACCGTAGACTTCATTTTTGGGGACGCCGTGTCGGTGCTTCAAAACTGCAACATCTACGTGAGGAAACCGATGAGCAACCAGCAGAACACGGTGACGGCACAAGGAAGAACCGACCCTAACGAGAACACAGGCATCATCATTCATAACTGTCTTATCACTGCAGCTGGGGACTTAAAAGCAGTGCAGGGCTCTTTCAGAACATATCTAGGTCGCCCCTGGCAAAAGTACTCAAGGACTGTGGTCATGAAGAGTGCCATCGATGGCTTGATTAACCCTGCAGGTTGGTTTCCATGGAGTGGAAACTTTGCTCTGAGCACTCTGTACTACGGTGAATATGCGAACACAGGAGCAGGTGGTAGCACCGGAGGGAGGGTGAAATGGCCAGGGTTTCGTGTGATCTCCAGTTCTGAGGCTGTCAAGTTCACCGTTGGAGATTTCTTGGCCGGGGACTCCTGGATTCCTGGGACTGGCGTGCCCTTCGATGCAGGTTTATGA 1590 0.4748 MDKLFFNCFIGYCLLYSLWVVHGKQLSCNETPYPGVCKHYVDTTNTLSTLDASSSSFHDMALKVSMEQAMEVYKLVSNMDLNNFKDKQSKSAWEDCLELYEDTLYQLKRSMNSNNLNDRLTWQSASIANHQTCQNGFTELNLPSHLNYFPSMLSNFSKLLSNSLSISKAMTLTSLSSTKQNGGRRLLSGGFPSWLSHSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAAAKLSGKGRVVVHVKAGVYKESIDIKRTVKNLMIIGDGMGATVVTGNDNVQDGSTTFRSATFGKFVVNSSVSGDGFIARDITFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTVDFIFGDAVSVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIIIHNCLITAAGDLKAVQGSFRTYLGRPWQKYSRTVVMKSAIDGLINPAGWFPWSGNFALSTLYYGEYANTGAGGSTGGRVKWPGFRVISSSEAVKFTVGDFLAGDSWIPGTGVPFDAGL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00780 529 FunFam Pectinesterase 205 529 - -
Spst3g00780 529 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Spst3g00780 529 Gene3D - 205 529 IPR012334 -
Spst3g00780 529 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Spst3g00780 529 SUPERFAMILY Pectin lyase-like 206 528 IPR011050 -
Spst3g00780 529 CDD PMEI-like_3 26 171 - -
Spst3g00780 529 SMART PMEI_2 21 166 IPR006501 GO:0004857
Spst3g00780 529 FunFam Pectinesterase 25 170 - -
Spst3g00780 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Spst3g00780 529 PANTHER PECTINESTERASE 24 519 - -
Spst3g00780 529 Pfam Pectinesterase 211 515 IPR000070 GO:0030599|GO:0042545
Spst3g00780 529 NCBIfam pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Spst3g00780 529 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Spst3g00780 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 171 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00780 Spst-Chr3 11333875 11336893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00780 13 529 Carbohydrate Esterase AT1G23200 51.892 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00780 - - gmx:100775898 939.102