Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00715 ATGCCGCAGAGCAGAGAGAAATTGTTGGTGATGGGTCTTGGTTTGAAGATGAAAAGCCTGAGGCACGACCCCAAGGCTTTGAAGTTACATGAGCAAGCAGGGAACAAAGGAAAGTACACTTTCATTCAGGCACATGAGCAAGCAGGAAGCAAAGGAAAGTACACTTTCATTCAGGCACATAGGGCATGGCTTCCCAAGTTTTTGATGCTGTGGATCCTTCTCATGGCCCTAATTGGTTGGTGCATCTATACTAAAATGGATGCTGACACTAAAGTCAGAAGAAAAGAGGTGCTGCGTAGCCTCTGTGATCAAAGAGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACCCCTTCTGCAATTGATCAGGAAACCTTTGCGGAGTATACAGCCAGGACTGCATTTGAACGGCCATTACTCAGTGGGGTGGCCTATGCACAGAGAGTGGTTAACTCGGAGAGAGAATCATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAAAGCCTTCTCAGGTTAGAGATGAGTATGCACCGGTGATATTTGCACAAGAAACTGTCTCCTACCTTGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAACATTTTGAGGGCCAGGGCCACTGGGAAAGCTGTTCTCACTAGCCCTTTTAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTATAAATCTAAGCTCTCTCCAAAGCCAACAATGGAAGAGCGCATTAAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCGCTAGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATATCACAAACTTTACTGATCACTTAATCATGTATGGCAAGCAAGATGAAGAAGGAGATATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCAACCAATTGGATAGCACTTACAACGGCATTTTTATTTTTTGTGATTCTTTTATTAGTTGGTTATATTTTATATGGTGCTGGAAATCATATTGTCAGAGTAGAGGATGATTTTCACAAAATGGAGAAATTAAAAGTCCGTGCAGAAGCAGCAGATATTGCCAAGTCAGAGTTCCTAGCTACTGTCTCTCATGAAATCAGAACACCCATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAGGCACCGAATTGAGTTCAACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGGAAAGCTCTGATTGCATTGATAAATGCGGTGCTTGACCTGGCCAAAATTGAAGCTGGCAAGTTAGAGCTGGAAACAGTTCCATTTGACATTAGATCCATACTAGATGATGTCCTTTCTCTTTTTTCTGAGAAATCTCGGCACAAGGGTTTAGAGCTGGCAGTATTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGTGATCCTGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGGCATATATTTGTGAAAGTCCATCTAGCTGAAAATAGAATGTCCTCAATGATTGGAAAAATTGAGACTTTTCTAAATGGACGATCAGATGAAGTTATGCATATGTCTGGTGGTGGTTATAATTTCAAGACGTTAAGTGGATATGAAGCAGCTGACGAGCGGAACAGCTGGGACAATTTTAAGCATCTGATCGCTGATGAAGAATTTTTCTTTGATGCTTCGGTTAAAAAGGTGGCCATTGAATCTTATGAGCAAGTCACCTTGATGGTCAGTGTGGAGGACACTGGAACTGGAATTCCTTTCTCAGCCCAAGAGAAGATTTTCGTGCCTTTTGTACAGGCAGACAGCTCAACCTCAAGACATTATGGTGGTACTGGCATTGGCTTGAGTATAAGTAAGTGCCTGGTTGACCTAATGGGTGGTGAGATAAGTTTCATAAGCCGACCCCAGATTGGGAGCACGTTTTCATTTACTGCAGATTTTGGAACAATTAAGAAAAATTCAATAACTGACATGAAGAAACATAATTTGGAAGACCTACGTTCCAGTTTTACCGGGCTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTGACTAGATACCATCTGAAGAGACTTGGGATTCAGGGCAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCCCAGGATTATCTCAGCCTGATATAATTTTTGTTGAGAAAGACTCATGGATTTGTGGAGAGGATGGGATGTTCAGTGTGTGGCAACTGGACTGGAAACAGCACGGGCAATTGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTAGTAATACTGAATTTGATAAAGCCAAAGCGGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAGCAAGTTCTGGGAACGGGGAAGAAGAGGCAGCTAGGGAAAGACATGAAGCCTAATGGTTCCACTTTTGCAAGAATCCTTCTTTGTGGGAAAAAAATCTTAGTGGTTGATGACAATAGGGTAAATAGGAGGGTTGCAGCAGGTGCATTACAAAATTTTGGAGCTCATGTTACTTGTGCAGAAAGTGGCAAAACTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGCTTTGAAGCAACTCGGCGAATTCGGGATATGGAGAGAAAGGCAAATGAGCAGTTGATGAAAGGTGAAGGTGGTGAAGGAAATGGCTTGAAAAAGGAGTACCATTTACCTATACTGGCCATGACAGCAGATGTAATTCACACAACATACGAGAAGTGCTTGAAATGTGGAATGGATGGTTATGTCTCAAAGCCTTTCGAGGAAGAGAATCTGTATCAAGCAGTTGAAAAGTTTTTCAACCCCAAGCCTACCTCGGACAACTCATTACAGAATGGCAACAGAACTGAGCAAGCACCTTAA 3135 0.4207 MPQSREKLLVMGLGLKMKSLRHDPKALKLHEQAGNKGKYTFIQAHEQAGSKGKYTFIQAHRAWLPKFLMLWILLMALIGWCIYTKMDADTKVRRKEVLRSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERESFEKQHGWVIKTMERKPSQVRDEYAPVIFAQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLSPKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNFTDHLIMYGKQDEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVRVEDDFHKMEKLKVRAEAADIAKSEFLATVSHEIRTPMNGILGMLGLLLGTELSSTQLDYAQTAQACGKALIALINAVLDLAKIEAGKLELETVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRMSSMIGKIETFLNGRSDEVMHMSGGGYNFKTLSGYEAADERNSWDNFKHLIADEEFFFDASVKKVAIESYEQVTLMVSVEDTGTGIPFSAQEKIFVPFVQADSSTSRHYGGTGIGLSISKCLVDLMGGEISFISRPQIGSTFSFTADFGTIKKNSITDMKKHNLEDLRSSFTGLKAIVVDGKPVRAAVTRYHLKRLGIQGKVANSINKAVSLCGKNGSLTPGLSQPDIIFVEKDSWICGEDGMFSVWQLDWKQHGQLFKIPQMILLATNISNTEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDMKPNGSTFARILLCGKKILVVDDNRVNRRVAAGALQNFGAHVTCAESGKTALEMLQLPHNFDACFMDIQMPEMDGFEATRRIRDMERKANEQLMKGEGGEGNGLKKEYHLPILAMTADVIHTTYEKCLKCGMDGYVSKPFEEENLYQAVEKFFNPKPTSDNSLQNGNRTEQAP 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00715 1044 Pfam CHASE domain 138 318 IPR006189 -
Spst3g00715 1044 ProSiteProfiles CHASE domain profile. 135 347 IPR006189 -
Spst3g00715 1044 Pfam Response regulator receiver domain 889 957 IPR001789 GO:0000160
Spst3g00715 1044 SMART HisKA_10 408 473 IPR003661 GO:0000155|GO:0007165
Spst3g00715 1044 Gene3D - 472 708 IPR036890 -
Spst3g00715 1044 FunFam Histidine kinase 4 380 471 - -
Spst3g00715 1044 Gene3D - 382 471 - -
Spst3g00715 1044 PANTHER TWO-COMPONENT HISTIDINE KINASE 50 1022 - -
Spst3g00715 1044 Gene3D - 86 138 - -
Spst3g00715 1044 Gene3D CHASE domain 139 354 IPR042240 -
Spst3g00715 1044 Pfam His Kinase A (phospho-acceptor) domain 408 473 IPR003661 GO:0000155|GO:0007165
Spst3g00715 1044 FunFam Histidine kinase 4 139 354 - -
Spst3g00715 1044 CDD HisKA 408 469 IPR003661 GO:0000155|GO:0007165
Spst3g00715 1044 CDD REC_hyHK_CKI1_RcsC-like 889 1020 - -
Spst3g00715 1044 SUPERFAMILY CheY-like 726 861 IPR011006 -
Spst3g00715 1044 SMART HKATPase_4 520 705 IPR003594 -
Spst3g00715 1044 PRINTS Bacterial sensor protein C-terminal signature 689 702 IPR004358 GO:0016310|GO:0016772
Spst3g00715 1044 PRINTS Bacterial sensor protein C-terminal signature 665 683 IPR004358 GO:0016310|GO:0016772
Spst3g00715 1044 PRINTS Bacterial sensor protein C-terminal signature 630 644 IPR004358 GO:0016310|GO:0016772
Spst3g00715 1044 PRINTS Bacterial sensor protein C-terminal signature 648 658 IPR004358 GO:0016310|GO:0016772
Spst3g00715 1044 ProSiteProfiles Response regulatory domain profile. 730 860 IPR001789 GO:0000160
Spst3g00715 1044 ProSiteProfiles Histidine kinase domain profile. 415 705 IPR005467 -
Spst3g00715 1044 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 396 474 IPR036097 GO:0000155|GO:0007165
Spst3g00715 1044 SMART REC_2 887 1020 IPR001789 GO:0000160
Spst3g00715 1044 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 520 703 IPR003594 -
Spst3g00715 1044 CDD HATPase_EvgS-ArcB-TorS-like 525 703 - -
Spst3g00715 1044 Gene3D - 883 1030 - -
Spst3g00715 1044 Gene3D - 723 864 - -
Spst3g00715 1044 SUPERFAMILY CheY-like 886 1025 IPR011006 -
Spst3g00715 1044 ProSiteProfiles Response regulatory domain profile. 888 1024 IPR001789 GO:0000160
Spst3g00715 1044 SMART CHASE_2 135 320 IPR006189 -
Spst3g00715 1044 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 463 700 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00715 Spst-Chr3 10704526 10711857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00715 49 1033 Histidine Kinase Gene Family AT2G01830 69.587 0.0 1366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g00715 HATPase_c 5.4e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00715 K14489 - gmx:100818481 1759.58