Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00713 ATGGGGAAGAAGAAGAAGAGGGTTTCCTCGAAGGTGTGGTGCTACTACTGCGATCGCGAATTCGACGACGAGAAGATCTTAGTGCAGCATCAGAAAGCGAAGCACTTCAAGTGCCATGTCTGCCACAAAAAGCTCTCCACCGCCGGTGGCATGGCCATTCACGTCCTTCAGGTCCACAAAGAATCCGTCACCAAGGTGCCCAATGCAAAACCTGGCAGGGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTGGCTGCACATTATGGTGAAGAAGAAGATGACCTTCCATCGAAGGTAGCCAAGGTTGATATTCCACCAACTCAGCTTGTAGGTGGAATGAGGCCACCTCCTTTGGGTACAGGATATCCTCCACGATCAGCCTTGCCCACAATTCCGCCAGTTTATAATCCAGCTGTACCCTTGCCACCAAATGCTTGGGTGGTTCCACCTCGACCACAGCCATGGTTTTCACAACCTCCAGCTGTTTCAGTTCCTCCTCCTGTTCCATACACACAGCAGCCATTATTTCCTGTGCAGAACGTGAGACCTCCACTTCCGGCAACTGTTCCTGCACTTCAAACTCAGATTGCTCCTCCTGGATTGGTTACATCAGCACCTGTCCCAGTTTCACAACCTTTATTCCCTGTTGTTGGAAATAACCATACGACAACTCAAAGTTCAACATTTTCTGCTCCGCCTCTGCCCTCAAGTGTTTCATCAGTTACTCCAGTGATGTCTGCAAATGTCCCTGTTGATACTCATTTGAGTACCCAGTCTTCGGTAACAAGTGGCTACCAGGCTATAGGGGTTCCAGGTGCAGCAGCAAGTAATTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTACTTCTCAACCTGCCACCAATGAGGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCTATTGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTGGCTGGTCGTATGGCATTTTAG 1116 0.4794 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDLPSKVAKVDIPPTQLVGGMRPPPLGTGYPPRSALPTIPPVYNPAVPLPPNAWVVPPRPQPWFSQPPAVSVPPPVPYTQQPLFPVQNVRPPLPATVPALQTQIAPPGLVTSAPVPVSQPLFPVVGNNHTTTQSSTFSAPPLPSSVSSVTPVMSANVPVDTHLSTQSSVTSGYQAIGVPGAAASNSHSYASGPNTGGPSIGPPPVIANKAPTSQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00713 371 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Spst3g00713 371 MobiDBLite consensus disorder prediction 286 311 - -
Spst3g00713 371 SMART c2h2final6 12 35 IPR013087 -
Spst3g00713 371 SMART c2h2final6 36 59 IPR013087 -
Spst3g00713 371 Gene3D Classic Zinc Finger 1 66 - -
Spst3g00713 371 PANTHER ZINC FINGER PROTEIN 207 1 371 - -
Spst3g00713 371 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Spst3g00713 371 CDD SUF4-like 13 92 - -
Spst3g00713 371 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00713 1 351 C2H2 Transcription Factor Family AT1G30970 63.187 3.90e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g00713 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00713 - - gmx:100819009 692.575