Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00678 ATGGACACAGCCTCCACCCCTCCCCCTCCGCCCACCGCCGTCCCTTTCACCGTCGAACCCAACAATCACGTCTCGTCCCCGAACCCTAACCCCAAGCACCCGCCATATGAAGAGATGATATACACGGCGATTGGGGCTCTGAAGGAGAAAGATGGGTCGAGCAAGCGCGCCATAGGAAAGTACATAGAGCAAGTGTACAAGGACCTTCCATCCACTCACTCTGCACTTTTGACTCACCACCTCAACCGTTTGAGATCAGTTAACCTTCTCGTCATGGTAAAAAAATCCTACAAGCTTCCTGGATCTGATCCTCTTCCTGCATCCCCTCCCTCTCAAGCCCAAAAGAGCCGTGGAAGGCCTCCCAAGCCCAAACCCCTGCCCACCACCGAGCCTGTCTGGGCTTCACTCGGCTTATCGGATGACCCTGCCGCCCTATCCGCCGGAGACACTGCCTCTCAATCGGCCAAAAGAGGTCCGGGTCGTCCCAAAAAGATCGTGGCTGTGAGCTCGGGCCTGCCAGTCCCGGTTCGAAGAGGCCGCCCACCTGGTTCCGTCGGGATTGCTAAGTTGGCCAAGAGGGCTGGACGTCCCCCAAAGCCCAGATCCGTGTCAGCTATCTCCAGTGGGCTCAAACGACGGGGCCGTCCGCCTAAAGCTCAATCCAACCTCGCCATCATCCCCTTTGCGGCCCCGGTTGGTCCTGACCAGCCCTCGGTGCAGCCCATCATTCCTGCTGCTTCTGTGCCCAATGGGTCTCCCAGGCCCAGAGGGCGCCCCAGAAAGATTGTTACTACTGGTGGTGCTCCACCTCTCTCAGCCCGTGGCCGGGGACGGCCACGTGGGGTCTTGCCTTTGATTAGGGCGGGTCGCCTCCAGAAACTCGCCGTTGGAAGGGCCAAGAATCCTGCAAGGAGGCCCGTGGGCCGCCCAAAGGGATCGACGGCTGCTGCAATAACTGCACAAAAGGCTGATAATGAAGATCTGAGGAAGAAGCTTGAACACTTTCAAACCAAAGTGAAGGAGTCTCTTGGCACGCTTAAGCCCTACTTCAACCATGAAAGCCCAGTCACTGCAATTGCAGCAATTCAAGAGCTAGAAGTGCTTTCAACTTTGGACCTTAAAGCACCATTGAGAGATGAGACTCAGCAACAGCCAGAACCACTTCCGCAGACACAGGTGTATGAACAGCAATATCCCCCCCAGGTGTCGCAACAGCCACTGCTGCAGCAATTTTTTCAACAACATTCATGA 1251 0.5643 MDTASTPPPPPTAVPFTVEPNNHVSSPNPNPKHPPYEEMIYTAIGALKEKDGSSKRAIGKYIEQVYKDLPSTHSALLTHHLNRLRSVNLLVMVKKSYKLPGSDPLPASPPSQAQKSRGRPPKPKPLPTTEPVWASLGLSDDPAALSAGDTASQSAKRGPGRPKKIVAVSSGLPVPVRRGRPPGSVGIAKLAKRAGRPPKPRSVSAISSGLKRRGRPPKAQSNLAIIPFAAPVGPDQPSVQPIIPAASVPNGSPRPRGRPRKIVTTGGAPPLSARGRGRPRGVLPLIRAGRLQKLAVGRAKNPARRPVGRPKGSTAAAITAQKADNEDLRKKLEHFQTKVKESLGTLKPYFNHESPVTAIAAIQELEVLSTLDLKAPLRDETQQQPEPLPQTQVYEQQYPPQVSQQPLLQQFFQQHS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00678 416 SMART h15plus2 30 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g00678 416 Coils Coil 318 338 - -
Spst3g00678 416 Gene3D - 29 114 IPR036388 -
Spst3g00678 416 MobiDBLite consensus disorder prediction 376 400 - -
Spst3g00678 416 SUPERFAMILY "Winged helix" DNA-binding domain 29 107 IPR036390 -
Spst3g00678 416 CDD H15 31 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g00678 416 PRINTS AT-hook-like domain signature 114 124 IPR017956 GO:0003677
Spst3g00678 416 PRINTS AT-hook-like domain signature 154 165 IPR017956 GO:0003677
Spst3g00678 416 PRINTS AT-hook-like domain signature 251 261 IPR017956 GO:0003677
Spst3g00678 416 PANTHER HISTONE H1 7 219 - -
Spst3g00678 416 MobiDBLite consensus disorder prediction 98 221 - -
Spst3g00678 416 FunFam Histone H1.2 29 109 - -
Spst3g00678 416 Pfam linker histone H1 and H5 family 33 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g00678 416 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 32 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g00678 416 MobiDBLite consensus disorder prediction 1 36 - -
Spst3g00678 416 MobiDBLite consensus disorder prediction 237 281 - -
Spst3g00678 416 MobiDBLite consensus disorder prediction 1 16 - -
Spst3g00678 416 SMART AT_hook_2 191 203 IPR017956 GO:0003677
Spst3g00678 416 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Spst3g00678 416 SMART AT_hook_2 175 187 IPR017956 GO:0003677
Spst3g00678 416 SMART AT_hook_2 210 222 IPR017956 GO:0003677
Spst3g00678 416 SMART AT_hook_2 156 168 IPR017956 GO:0003677
Spst3g00678 416 SMART AT_hook_2 304 316 IPR017956 GO:0003677
Spst3g00678 416 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Spst3g00678 416 SMART AT_hook_2 253 265 IPR017956 GO:0003677
Spst3g00678 416 MobiDBLite consensus disorder prediction 296 320 - -
Spst3g00678 416 MobiDBLite consensus disorder prediction 383 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00678 Spst-Chr3 10210824 10213443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00678 26 107 Single Myb Histone (SMH) Gene Family AT1G49950 40.476 2.61e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00678 - - gmx:547676 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00678 3 10210824 10213443 Spst3g00678 3 10210824 10213443 ECH