Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00675 ATGAGTGAAACAAGGGGCACCCATATCCTGTATATCTGTGTCTCTTTGGGTGTCATTGCATCACCCAACGTTCTGTTGTCATCCTGTGCTGTTCTCTTCCGTAAACCTGGGAAGAAACCTCCCCTCCCCACCTTTGTGAGACGATTGTTGATGGCTTCTAAATTCTGGACCCAGGGTGGAAGTGATTCTGAGGAGGAGGAGAGTGATTATGACGAGGAGGTCGAAGCCACAGTGGGTGATTCTGCCAGTCAAGCCGTGACAAGCAGGTACCTGCAGGATAATGCAAGTGACAGTGATGACTCCGATGGCCAAAAGCGTGTTGTGAGGTCAGCAAAAGACAAGCGTTTTGAGGAGATGGCTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAGGAGAATTTTGACAAGATTAACAAACAACTTGAGAAAGTCATGCGTATCACTGAGTCGTTGAAGGTCCCCAATCTTTACATAAAGGCACTTGTGATGTTGGACGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAAAAGAATAATAAGCAGTATGAGGAGTTGATTAATAAGTGCAGGGAGAACCCTGAGAGTGAGGAGGAAAAAGAAGAAGAGGAGAGTGATGAAGATTATGAAAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGGAAACCAGAAGCAAAATCTGATTCAGAAGCCTCTCAATATGATGATGAAAAGCCAGATGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGACTTTTAGATAGACAGTTCATGAAAAACCCTAATGAGATCACATGGGATACTGTTAACAAGAAGTTTAAAGAGGTTGTGTCTGCTAGGGGAAGGAAGGGAACTGGGAGGTTCGAACAGGTTGAGCAGCTCACTTTCCTAACGAAAGTTGCTAAGACTCCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGTCTCAATGGGTACATGCCCATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTCCAGTACCCAAACATAGTGGTTGATGATTCTGTAGAACCAGATGAGAATGAAACACAGAAAGGTACTGAACATAATGGACCAATTCGGGTTTGGGGGAACTTAGTTGCTTTCTTAGAAAGAATTGATGTCGAGTTTTTCAAGAGCTTGCAATGCATAGACCCTCATACACGTGACTATGTGGAGAGACTTAGGGATGAACCCTTATTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTGGCCTTGAGGAGGGTGGAGCTCATCTACTACAAACCACAGGAAGTTTATGGTGCTATGAGAAAATTGACTGAGTTGGCAGATGCTGGGGAGAATGGAGGGGAGGCAAGTGAGGAGTCAAAAGGATTTGAGGAACCAAGAATTCCCGCTGCATTTGTTGTTACCCCAGAGGTTGTGCCACGGAAACCCACCTTCCCTGAGTATAACAGAACCCTAATGGATGTATTGGTATCTCTGATATACAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCAGCATGCACTTCTTGATGAGTTTTCAGTTGCCCGTGATCTGCTACTTATGAGCCATTTGCAAGATAGTGTTCAGCATTTAGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGCTTATGTGCTTTTCGGGTTGGATTGATTTCTGAAGCACACGGCTGTCTGTCTGAACTCTACTCTGGCGGAAGGGTGAAGGAGTTGCTGGCACAAGGTGTCTCACAAAGTCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCACATCAATCTTGAGCTCCTGGAGGCCGTCCATCTTGTGTCTGCTATGCTGCTGGAAGTTCCCAACTTGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAAACTTTCCGTCGCTTGCTTGAGGTAAGCGATAAACAAACATTTACTGGTCCACCAGAAAATGTTCGAGATCATGTTATGGCTGCTACAAGGGTTCTTCGCAAGGGAGACTTCCAGAAGGCTTATGACATTATCGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACAGTGTGCTTGAAATGCTGAAGGACAAAATCAAAGAGGAGGCATTGAGGACATTCCTCTTTACCTTCTCTTCATCTTACGAATCCTTAGGTCTGGATCAGCTCAACAAAATTTTTGATCTCTCTGTTTCTCGCACTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTTATGGAAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAGTTATCTATTCTTGCCGAGAGTAATGAAAAAGCAACAGAGGTAAGGATAGGTGGTGGTGGATTAGATCTGCCTCTGCGACGGAGAGATGGCCAGGACTATGCCGCTGCTGCTGCAGCTGGTAGTGGAACAACCTCTGCAGGTGGGAGGTGGCAAGACCTGTCCCTTTCTCAGCCAAGACAAGGCAGTGGGCGTACCGGATATGGTGGTGGCGGTGGAAGACCAATGGCATTAGGCCAAGTAGCTGGGAGTGGCTATTCAAGGGGACGAGGAACAGGTGCTTCATATGGAGGTTCAGGTAGGACTTCTCAAAGGGGTTCAGCATTAAGGGGATCCCATGGCGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGCGCGAGCTTGA 2943 0.4526 MSETRGTHILYICVSLGVIASPNVLLSSCAVLFRKPGKKPPLPTFVRRLLMASKFWTQGGSDSEEEESDYDEEVEATVGDSASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQENFDKINKQLEKVMRITESLKVPNLYIKALVMLDDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKEEEESDEDYESDDEIIEPEQLRKPEAKSDSEASQYDDEKPDEGPWDQKLSKKDRLLDRQFMKNPNEITWDTVNKKFKEVVSARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGYMPINVWKKCVQNMLIILDILVQYPNIVVDDSVEPDENETQKGTEHNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYGAMRKLTELADAGENGGEASEESKGFEEPRIPAAFVVTPEVVPRKPTFPEYNRTLMDVLVSLIYKYGDERTKARAMLCDIYQHALLDEFSVARDLLLMSHLQDSVQHLDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNLAANVHDAKRKVISKTFRRLLEVSDKQTFTGPPENVRDHVMAATRVLRKGDFQKAYDIIVSLDVWKFVRNRDSVLEMLKDKIKEEALRTFLFTFSSSYESLGLDQLNKIFDLSVSRTHSIVSRMMINEELYGSWDQPTGCILFQDVEHSRLQALAFQLTEKLSILAESNEKATEVRIGGGGLDLPLRRRDGQDYAAAAAAGSGTTSAGGRWQDLSLSQPRQGSGRTGYGGGGGRPMALGQVAGSGYSRGRGTGASYGGSGRTSQRGSALRGSHGDVSTRMVSLKGARA 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00675 980 MobiDBLite consensus disorder prediction 948 963 - -
Spst3g00675 980 MobiDBLite consensus disorder prediction 225 243 - -
Spst3g00675 980 MobiDBLite consensus disorder prediction 184 278 - -
Spst3g00675 980 MobiDBLite consensus disorder prediction 58 82 - -
Spst3g00675 980 Pfam PCI domain 708 836 IPR000717 -
Spst3g00675 980 MobiDBLite consensus disorder prediction 887 980 - -
Spst3g00675 980 Coils Coil 194 221 - -
Spst3g00675 980 MobiDBLite consensus disorder prediction 897 916 - -
Spst3g00675 980 MobiDBLite consensus disorder prediction 185 204 - -
Spst3g00675 980 MobiDBLite consensus disorder prediction 62 76 - -
Spst3g00675 980 MobiDBLite consensus disorder prediction 205 224 - -
Spst3g00675 980 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 93 700 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Spst3g00675 980 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 52 919 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Spst3g00675 980 ProSiteProfiles PCI domain profile. 668 840 IPR000717 -
Spst3g00675 980 MobiDBLite consensus disorder prediction 244 278 - -
Spst3g00675 980 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Spst3g00675 980 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 51 975 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Spst3g00675 980 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 769 857 IPR000717 -
Spst3g00675 980 SUPERFAMILY "Winged helix" DNA-binding domain 764 839 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00675 Spst-Chr3 10187720 10191688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00675 51 980 Eukaryotic Initiation Factors Gene Family AT3G56150 67.987 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00675 K03252 - gmx:100781967 1576.61