Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00646 ATGGCGAGGCCACAAAGGACAGGTAGAAATAAAAGCCTAGAGACTCTAATGGACTCGGACAACCCAGGAACCGGAAGAAATGTGAACCAACTGCGACCCCAGAAGTCCACTCCTGGCAATGGCCTTGAATTCAGTAATCTCTCGTATAGTATCATAAAGAAGCAGAAAAAGGATGGGGTTCGGATCAAGAAAGAAACATATCTTCTTCATGATATCTCTGGCCAGGCAATAAAAGGTGAAATAATGGCAATCATGGGGCCTAGTGGTGCGGGCAAGTCCACCTTTCTTGATGCATTGGCAGGGAGAATTGCTAAAGGGAGTCTAGAAGGATCAGTTAAACTTGATGGAAAACCAATTACTACAAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTTCCTATGTTGACAGTTTTTGAAACATTTATGTTTGCAGCTGAAGTCAGGCTTCCTCCTTCCATTTCCAGGGGTGAAAAGAAGAAGAGGGTTCATCAACTCCTTGACCAACTGGGCTTACAGAGTGCTACACATACCTATATTGGTGACGAAGGAAGGAGAGGAGTGTCAGGAGGAGAACGACGAAGGGTATCTATTGGCATAGACATCATCCATAAGCCATCACTTCTGTTTCTAGACGAACCTACCTCAGGCCTTGATTCTACAAGTGCATACAGTGTTGTAGAAAAGGTTAAAGACATAGCTCGAGGAGGAAGCATTGTCCTTATGACCATACACCAGCCTTCATTTAGAATTCAAATGCTCCTAGACCAGATTACCGTCCTTGCAAGGGGAAGATTGATTTACATAGGCAAGCCAGATGCAGTTCAGGCCCACATGTCCAGATTTGGAAGGCCAGTACCTGATGGAGAAAACGGTATTGAGTATCTTCTAGATGTTATAGGTGAATATGATCAAGCAACGGTTGGGCTTGATCCCCTAGTCCAATTCCAACGAGATGGCCAGAAACCTGACCCAGTAGCCATGACGCCTGTTCCAAAAACTCCAAGAACTCCTTTCAGAAGGAACACCCCTGCATCTAAACAAATTATTAGTCTACGCAGCCAAGGATTTACTGCTGGAACACAACAACCTGATTCTGCACAGTTTAGTTATCGAGTCGAAGATGACGATGATGAGATTTTTGATAACTCGCTTGAAAGGAAAAGTGTTGCAACACCAAGGAATATGACTAGTGGTGTTCACCCGCGTTTGGCTTCTCAGTTCTACAAAGATTTTTCAGCCAAAGATTTCTCTGTCTGGCTTTACCATGGTGTCAGAGGAACCCCGCGGCGCCAACCATCATGGACTCCCGCAAGAACGCCAGGATGGACACCTGGGAAAACACCCATGTCAGGACCAAGAAGCGCAGTTTCCTACCAATATTCTGCAGCTTTTCAAAATCCCTATCGCCCCAAAACTCCTGCAGTGAATGGCCAGTCTATGGACTACTCAGCAACTTCATATGCCCCTTCCATTGAAGCATTCGAGATTGAGGAAGCGCTTGATGAGCCAAACTTAGGATCCAAGTATGCAAACCCATGGTTGCGTGAGGTTGCAGTGCTCTCGTGGCGAACAGCACTAAATGTAATTCGCACGCCGGAACTCTTCCTCTCCCGTGAGATTGTGTTAACTGTTATGGCACTTATCCTGTCCAGCATTTTTGGAAATCTGAGTCACCATTCTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATATTTGCAGTGTGCCTTGTTTTCTTTTCCTCCAATGATGCAGTCCCATCTTTTATCATGGAGAGATTCATCTTCATCAGGGAGACTTCCCATAACGCTTACCGTGCTTCTTCGTATGTCATTTCTTCCCTCATTGTTTACCTCCCATTTTTCGCGGTTCAAGGCCTCACATTTGCTGTCATAACCAAAGAGATTCTTCACTTGAATAGCAGTCTCTTGTATTTCTGGCTAATACTTTATGCCTCGCTTATTACTACCAATGCATATGTGATGCTTGTCAGTGCACTTGTGCCCAGTTACATCACAGGGTATGCAGTAGTCATAGCCACCACAGCACTATTCTTTTTGACTTGTGGTTTCTTCCTCAAGCAAACTCAAATACCCTTTTACTGGAGGTGGCTTCACTATATTTCTGCAATCAAATATCCATTTGAGGCATTGCTCACAAACGAATTCAAGAACCTTGACTGCTACACAGGAAACATAGCAGAATTATCCCCTGGACCATTAGGAGACTTGAAGCCCAGCAAACATCATAACAGCAGTCTGCCAGCTAACTGCTTATTAGGTGTAGATATCTTGTCCTCAATGGATATCAAAATGCAAAACATATGGTATGACATTTTAATCCTGCTAGCTTGGGGTGTTCTTTACAGGTTGTTCTTCTATTTGGTTTTAAGATTTTACTCCAAGAACGAGAGAAAATGA 2439 0.4387 MARPQRTGRNKSLETLMDSDNPGTGRNVNQLRPQKSTPGNGLEFSNLSYSIIKKQKKDGVRIKKETYLLHDISGQAIKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVKLDGKPITTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRGEKKKRVHQLLDQLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQMLLDQITVLARGRLIYIGKPDAVQAHMSRFGRPVPDGENGIEYLLDVIGEYDQATVGLDPLVQFQRDGQKPDPVAMTPVPKTPRTPFRRNTPASKQIISLRSQGFTAGTQQPDSAQFSYRVEDDDDEIFDNSLERKSVATPRNMTSGVHPRLASQFYKDFSAKDFSVWLYHGVRGTPRRQPSWTPARTPGWTPGKTPMSGPRSAVSYQYSAAFQNPYRPKTPAVNGQSMDYSATSYAPSIEAFEIEEALDEPNLGSKYANPWLREVAVLSWRTALNVIRTPELFLSREIVLTVMALILSSIFGNLSHHSFKDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAVITKEILHLNSSLLYFWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKQTQIPFYWRWLHYISAIKYPFEALLTNEFKNLDCYTGNIAELSPGPLGDLKPSKHHNSSLPANCLLGVDILSSMDIKMQNIWYDILILLAWGVLYRLFFYLVLRFYSKNERK 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00646 812 MobiDBLite consensus disorder prediction 435 456 - -
Spst3g00646 812 MobiDBLite consensus disorder prediction 1 42 - -
Spst3g00646 812 MobiDBLite consensus disorder prediction 324 348 - -
Spst3g00646 812 FunFam ABC transporter G family member 6 57 284 - -
Spst3g00646 812 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 293 IPR003439 GO:0005524
Spst3g00646 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 287 IPR027417 -
Spst3g00646 812 CDD ABCG_EPDR 42 275 - -
Spst3g00646 812 Gene3D - 41 288 IPR027417 -
Spst3g00646 812 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
Spst3g00646 812 Pfam ABC-2 type transporter 523 729 IPR013525 GO:0016020|GO:0140359
Spst3g00646 812 MobiDBLite consensus disorder prediction 8 42 - -
Spst3g00646 812 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 799 - -
Spst3g00646 812 SMART AAA_5 78 278 IPR003593 GO:0016887
Spst3g00646 812 Pfam ABC transporter 69 221 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00646 Spst-Chr3 9960390 9963404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00646 79 298 Calmodulin-binding Proteins AT2G36910 26.009 1.35e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00646 K05681 - gmx:100819497 1426.38