Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00640 ATGAACTCAATTTCCACTTGTCAGTTGGAGAGCGATCGATTAGAGTTACGCAGGATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAGGAATGGATTCGTCGAGGATCCACCGATCAGAATCAGAATGCCGCCGCCGCCGCCGCCGCTGGTTCCTCCAATACAACGAATCGCCATAGGAGGAACGGTCCTATTCCTAATCATAATCATAATCCAAATCCTAATCCTAATCCGAATGCGAATCCGAAGAATAATGTGCAGAAGAGATTCAATTTGAGGGACTCTAATTTGCCCCAGCTTCTGCAAGAGATTCAGGACAAGCTCGTCAAAGGTGCTGTCGAATGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCACCAATCTGGTCTTGCTCCAGTTGCTTCTCTATCTTTCACCTCAACTGTATCAAGAAGTGGGCGCGTGCACCCACTTCTGTCGATGTGTCCGTGGACAAGAATCAGCGGTTCAACTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCACATCGTCCAAGGAGATTAGGTATGTGTGCTTCTGTGGTAAGAGGCCTGAACCCCCCTCCGATTTATATCTCTTGCCACATTCCTGTGGAGAACCATGTGCCAAACCTCTTGAAAGGGAGCTTGGAGGGGATAAGGAGGTTCTTTGTCCTCATGTCTGTGTCTTGCAATGCCATCCCGGCCCTTGCCCTCCTTGCAAAGCCTTTGCCCCTCCACGTTTGTGTCCTTGTGGCAAGAAAAATATCACCACTCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGTGGGCGTCATCGTTGTGAACAAATCTGTCATCTGGGACCTTGTGATCCTTGCAATATTCCAGTCAATGCTTCTTGCTTTTGCAGTAAAAAGATGGAGGTGATTCTTTGTGGGGACATGTCTCTGAAGGGTGAAATCAAAACCAAAGGTGGCGTTTTCTCTTGTGGTTCAACCTGTGGAAAGAAACTTGGTTGCGGTAATCATATTTGTATCGAGACTTGCCATCCTGGCAGCTGTGGGGAGTGTGGATTATTACCATCCCATATTAAGACATGCTGTTGTGGGAAAACCAGATTGAAGGAGGAACGACAGAGTTGTTTAGACCCGATACCTACCTGTTCACAAGTATGTGGGAAGTCCCTTCCCTGCGGGATTCATCACTGTAAAGAGGCATGCCACGCGGGGGATTGTTCTCCTTGTTTGGTTCTAGTATCCCAGAAGTGTCGATGCGGCTCTACTTCCCGAACTGTGGAGTGCTGTAAGACAAAAATGGAGAATGAGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATAGATGCAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAATATTCAAGTTGCGGATTGGGATCCACACTTCTGTTCATTGCCATGTGGAAAGAAGTTAAGGTGTGGGCAACATGCATGTGAATCCCTGTGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACCATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGCGGCACACCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTTGCATCCAGCGTCTCACAGCTGCCATTTTGGGGATTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAATTCTTAGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAAACTCTGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGCAGAACATGTCACCTCCCACCTTGTGATAATCCATCTGCCGTGCCAGGTACCCGATCCTCGTGTGGGCAAACATGCGGTGCTCCAAGGAGGGACTGCAGGCATACATGTACAGCTCCTTGTCACCCTTCAATTCCATGTCCAGATACAAGATGTGAATTCCCTGTCACAATTACCTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGATGCTGGTGGCAGCTGTGCTAATTATAATGCTGATGCTGTACATGAAGCTTCCATTATTCAAAAATTACCTGTGCTGCTTCAACCTGTTGCTGCAAATGGCAAAAAGGTTCCCCTCGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAATTAGAGCGGAAACGGGTTCTAGCAGATGCTTTTGAGATTACCACTCCTAATCTGGATTCTCTCCATTTTGGTGACAATCCTGTTGCTTCGGAATTGCTTGCAGACATGTTGAGACGTGATCCTAAATGGGTTTTGTCTGTTGAGGAGAGATGCAAGTTTTTAGTACTTGGCAAAAGCAGGGGAAACACGCAAGGTCCAAAGGTCCATGCTTTCTGTCCTATGTTGAAGGACAAAAGAGATGCAGTGATGGTCATTTCTGAGAGATGGAAGCTTGCTGTGAATGTAGCTGGTCGCGAGCCAAAGCGATTTGTAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTGCTCGTGTGCTAGGGTTTAAGGGTACTACAACTGTAAATGCACCCCTTCCTCCTGCATTTGATCCTTTAGTAGATATGGATCCTCGGCTTGTTGTCTCTTTTCTAGACTTACCAAGGGAGGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCTCTGGCTGTTTTTAACGATCCTGCCCGAGCTGCGACTGCAATGAGGAGGTTGGATCATGGTACTGTGTATCAGGGAGCCGTGGTGGTGATTGTTCCGAATGTTGGGGCATCAATAGCATCTTCAGCTACCAATGCCTGGGGAGGATCTGGAACAATGAAAGGAGGAGGATCGCTGGCAGCATTGAAGGGTAATCCATGGAAAAAGGATGTTGTTCAAGAGCCAGGTTGGAAAGATTCTTGGGGTGATGAGGAGTGGGCTAGTGGTTCTGCTAATGTCCATTTGCCTAATCAGAAGAAAGAAACCGTCGTATCTTCTTCAGTAAACCCTTGGAGTGTCTTAAATCAAGAATCTTCTTCAAGTTCATCTGTTGCAGCTGTTAGAATTGATGTTTCTAGGGAACACTCCGAATGTAGTTCTGTAAAAAAGTTGGAGCCTCATAATGGTGGTTCAAATCTAAGAGGACAGCATGCAGGAAACTTGGATACTTTAGAAGATTCTGATGTAGTAGATGATTGGGAAAAGGCTTGTGAATAG 3285 0.4661 MNSISTCQLESDRLELRRMSSQERSQRSRVPRQEWIRRGSTDQNQNAAAAAAAGSSNTTNRHRRNGPIPNHNHNPNPNPNPNANPKNNVQKRFNLRDSNLPQLLQEIQDKLVKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLTSSKEIRYVCFCGKRPEPPSDLYLLPHSCGEPCAKPLERELGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCNIPVNASCFCSKKMEVILCGDMSLKGEIKTKGGVFSCGSTCGKKLGCGNHICIETCHPGSCGECGLLPSHIKTCCCGKTRLKEERQSCLDPIPTCSQVCGKSLPCGIHHCKEACHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKMENEKFTCEKPCGQKKNCGRHRCSERCCPLSNPNNIQVADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCLHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSAVPGTRSSCGQTCGAPRRDCRHTCTAPCHPSIPCPDTRCEFPVTITCSCGRITANVPCDAGGSCANYNADAVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEITTPNLDSLHFGDNPVASELLADMLRRDPKWVLSVEERCKFLVLGKSRGNTQGPKVHAFCPMLKDKRDAVMVISERWKLAVNVAGREPKRFVVVHVTPKSRAPARVLGFKGTTTVNAPLPPAFDPLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVIVPNVGASIASSATNAWGGSGTMKGGGSLAALKGNPWKKDVVQEPGWKDSWGDEEWASGSANVHLPNQKKETVVSSSVNPWSVLNQESSSSSSVAAVRIDVSREHSECSSVKKLEPHNGGSNLRGQHAGNLDTLEDSDVVDDWEKACE 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00640 1094 CDD NF-X1-zinc-finger 207 265 - -
Spst3g00640 1094 CDD NF-X1-zinc-finger 336 379 - -
Spst3g00640 1094 ProSiteProfiles Zinc finger PHD-type profile. 115 176 IPR019787 -
Spst3g00640 1094 Pfam NF-X1 type zinc finger 346 363 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 Pfam NF-X1 type zinc finger 282 299 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 Pfam NF-X1 type zinc finger 641 663 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 Pfam NF-X1 type zinc finger 610 625 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 Pfam NF-X1 type zinc finger 565 574 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 Pfam NF-X1 type zinc finger 404 421 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 Pfam NF-X1 type zinc finger 462 473 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 Pfam NF-X1 type zinc finger 500 517 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 Pfam NF-X1 type zinc finger 229 244 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 MobiDBLite consensus disorder prediction 16 36 - -
Spst3g00640 1094 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 24 1000 IPR034078 GO:0003700
Spst3g00640 1094 CDD NF-X1-zinc-finger 272 320 - -
Spst3g00640 1094 CDD NF-X1-zinc-finger 490 533 - -
Spst3g00640 1094 CDD RING-CH-C4HC3_NFX1-like 117 174 - -
Spst3g00640 1094 SMART znfxneu3 557 575 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 SMART znfxneu3 648 669 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 SMART znfxneu3 227 245 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 SMART znfxneu3 346 365 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 SMART znfxneu3 500 519 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 SMART znfxneu3 462 492 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 SMART znfxneu3 282 301 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 SMART znfxneu3 404 423 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 SMART znfxneu3 610 639 IPR000967 GO:0005634|GO:0008270
Spst3g00640 1094 CDD NF-X1-zinc-finger 547 595 - -
Spst3g00640 1094 CDD NF-X1-zinc-finger 637 686 - -
Spst3g00640 1094 CDD NF-X1-zinc-finger 394 442 - -
Spst3g00640 1094 MobiDBLite consensus disorder prediction 16 89 - -
Spst3g00640 1094 MobiDBLite consensus disorder prediction 37 71 - -
Spst3g00640 1094 ProSiteProfiles Zinc finger RING-type profile. 118 174 IPR001841 -
Spst3g00640 1094 SUPERFAMILY RING/U-box 108 177 - -
Spst3g00640 1094 MobiDBLite consensus disorder prediction 1052 1094 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00640 Spst-Chr3 9928764 9932048 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Spst3g00640 zf-NF-X1 1.5e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00640 K12236 - gmx:106799700 1949.1