Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00635 ATGGTTATGGGTTGGAGAATACTGAGGAGAGGGAAAAAGAAGAAGATGCAGCAACGCAAGGTGGAGGAGGTGGTCACTCCCAACCACTTCCGGTGCCCGATTTCTCTGGAGTTGATGAAAGATCCGGTCACGCTCTGCACGGGCATTACATACGATCGACACTCCATAGAAACGTGGTTTGACCAAGGCAGCTTCACATGCCCCCTCACCAACCACATCGTCTCCAACTTCGATCTCATTCCCAACCACACGTTGAGGATCATCATCCAAGATTGGTGCGTGGAGAATCAACACTCTGGCGTTCAAAGAATCCCAACCCCGAGAGTACCCATCACCCCAATCCAGGTACACCAACTCCTTCTCCTTCTGCATGCCAAGGCCTCGCGGCTCGACCAACACGCCTGCCTTGAATCGGTGCACAACATTCAGAGATGGGCTGCGGAGAGCAAGAGAAACATGCGTTGTATAGTGGAGAATGGAGCACCAACTGCGTTAGCCTCTGCGTTTCATGCGTTTGCTAATGCTAGTGTGAGTGACTCCATGGAGAACAATGTCTATGTGAGTGTGCTTCATCAGATTTTGTCGGCTCTCAACTCCATGTTTCCAACCGAATTCGAAGCTCATAATCATTTGGGGTCTCCACCTTCTTTACGTTGCATGGTTTCGTTTCTTAGGCGACAGGATCTCTCGGGGAAAGAGAACTCCATTGTCGCACTCAAAGACCTTCTTTCTTTTGGTCATCATCAACACCTCGAGGCTTTGGCGCAAATTGAAGGAATTAACCAACTTTTGCTCGAATTTCTTAACCAAAGAATTTATGGTCCAACCATCGTGAAAGCTTCCTTGGCGGTAGTCTGGTATTTGGTTTCGTCGTCCTCTCCTTGTAGCCACAAAATGAGATTGAAGTTTATTGAATTGGGTATGGTTTCTTTGGTGCTCGACATTCTCGTTGACTCGGAAAAGAGCCTCTGTGAGAACGGTCTCGCTGTTCTTGACTCCCTCTGCGCTTGTGAAGAAGGAAGAGAAAAAGCTTATGGTAATGCGTTGGCGATTCCTCTTCTGGTGAAGAAATTGTTGCGAGTTTCATCGTTGGGCTCGGATTACTGTGTTTCTTCCATTTGGAAGCTATGCAAATTTGGAGAAGAAATGGTTCTTCTGGAGGCCCTGCATGTGGGTGCATTTCAGAAGCTTTTGCTGGTATTGCAGGTTGGTTGTGGTGATGAGACGAAAGAGAAAGCAACCGAACTTCTCAAATTGCTCAATCCTTACAGGGATGGCGCAATAGAATGCATTGATTCGGATTTCAAGAACCTTAAGAGATCAATTTAA 1329 0.4718 MVMGWRILRRGKKKKMQQRKVEEVVTPNHFRCPISLELMKDPVTLCTGITYDRHSIETWFDQGSFTCPLTNHIVSNFDLIPNHTLRIIIQDWCVENQHSGVQRIPTPRVPITPIQVHQLLLLLHAKASRLDQHACLESVHNIQRWAAESKRNMRCIVENGAPTALASAFHAFANASVSDSMENNVYVSVLHQILSALNSMFPTEFEAHNHLGSPPSLRCMVSFLRRQDLSGKENSIVALKDLLSFGHHQHLEALAQIEGINQLLLEFLNQRIYGPTIVKASLAVVWYLVSSSSPCSHKMRLKFIELGMVSLVLDILVDSEKSLCENGLAVLDSLCACEEGREKAYGNALAIPLLVKKLLRVSSLGSDYCVSSIWKLCKFGEEMVLLEALHVGAFQKLLLVLQVGCGDETKEKATELLKLLNPYRDGAIECIDSDFKNLKRSI 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00635 442 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Spst3g00635 442 Pfam U-box domain 27 97 IPR003613 GO:0004842|GO:0016567
Spst3g00635 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 104 IPR013083 -
Spst3g00635 442 Gene3D - 116 432 IPR011989 -
Spst3g00635 442 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Spst3g00635 442 SUPERFAMILY ARM repeat 131 420 IPR016024 -
Spst3g00635 442 FunFam RING-type E3 ubiquitin transferase 26 97 - -
Spst3g00635 442 CDD RING-Ubox_PUB 27 79 IPR045210 -
Spst3g00635 442 PANTHER WDSAM1 PROTEIN 22 421 IPR045185 GO:0061630
Spst3g00635 442 SUPERFAMILY RING/U-box 18 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00635 Spst-Chr3 9906230 9907558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00635 23 440 U-box Gene Family AT5G37490 39.762 2.18e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00635 - - vun:114179193 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00635 3 9906230 9907558 Spst4g02865 4 68387680 68388993 PCT