Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00631 ATGGGCTTTGCATTGGACGCTCCAAGAGAGAGAAAGAGAGAAAGGAAAAAAAGCATGGAAGGAGGATCTGGCGAGAAATGGAAGAGTGTATACAGAGAGTGCTTGAGAAACCATGCAGCGAGCCTCGGAAGCTACGCCACCGACGGCTGCGGGGAGTTCACGGTGGACGGCGGGGGGCTACAATGCGCGGCGTGCGGGTGCCACCGCAACTTCCACCAGAAAGTGAAGTACCCGGCTGGAGCGGAAAGGGCGGGAGAGATGGAATACGGTGGGGAAGGGGGGAAGAAGCGGTTCAGGTCCAAGTTCAGCGCAGATCAGAAGGAGAAGATGCTGGCGTTTGCAGAGAAGCTTGGTTGGAAGCTTCAGAGGAAGGATCTGGATGATGAGATTGAGAGGTTCTGCAGAAGCATTGGAGTCACTAGGCAGGTCTTCAAAGTTTGGATGCATAACCACAAGAACTCTTCTTCCTCTGCTTCTGCTTCTGCTTCCACGGGAAACATCTCCTCCCTCACCCAGTAA 519 0.5414 MGFALDAPRERKRERKKSMEGGSGEKWKSVYRECLRNHAASLGSYATDGCGEFTVDGGGLQCAACGCHRNFHQKVKYPAGAERAGEMEYGGEGGKKRFRSKFSADQKEKMLAFAEKLGWKLQRKDLDDEIERFCRSIGVTRQVFKVWMHNHKNSSSSASASASTGNISSLTQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00631 172 MobiDBLite consensus disorder prediction 152 172 - -
Spst3g00631 172 Gene3D - 80 159 - -
Spst3g00631 172 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 31 74 IPR006456 -
Spst3g00631 172 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 31 75 IPR006456 -
Spst3g00631 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 154 - -
Spst3g00631 172 Pfam ZF-HD protein dimerisation region 30 75 IPR006456 -
Spst3g00631 172 SUPERFAMILY Homeodomain-like 89 153 IPR009057 -
Spst3g00631 172 MobiDBLite consensus disorder prediction 1 25 - -
Spst3g00631 172 FunFam Zinc-finger homeodomain protein 2 80 157 - -
Spst3g00631 172 NCBIfam homeobox domain, ZF-HD class 95 153 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00631 Spst-Chr3 9875159 9875677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00631 31 154 ZF-HD Transcription Factor Family AT4G24660 43.452 3.69e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst3g00631 ZF-HD_dimer 7.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00631 - - ccaj:109799743 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00631 3 9875159 9875677 Spst4g02880 4 68496610 68497110 PCT