Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00629 ATGGCCTCCGTAGTAAGGATTGACATGTTAGTCAACAACTCATCTCCTTCTGAGCCATTTTCCTGCGTCCAGAATGCTACTGCCACTAATAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTATCACCCAAGACCTTGCTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTGCAGATGCACCGGCGCCGCCACAAGGTGCCGTGGAAGCTCTTGAAGAGGGAGACGCCGCTGGTGAAGAAGCGAGTCTTCGTTTGCCCGGAACCTACTTGCTTGCACCATGACCCGTGCCATGCTCTGGGTGATCTTGTTGGCATAAAGAAGCATTTCAGAAGGAAACACAGCAGTCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCGGTGCAGTCTGATTACAAAGCACATCTTAAAACCTGTGGCACTCGAGGGCACTCTTGCGATTGTGGTCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCATCAAGACGCGTGCAACATGGGGCAGTTGGGGGCAGAAACGCAGGCAGTGCAAGCTGCTGCATGCTTATCTCGAACAGCTTCAAGCCCTTCAAGCGAAAACAATTTCAGCACAGATACCCCTTGGCAAACCGGTGTAGTAATTCCAAAGCCCACAGTAACAGTAGTAGAACCGGCCTCATTCACCAACCCTACCACTGCACAAACCAACAACGACAACAACAAGAACAAAGTGAACAAACTCCAACCCAACCTTGAGCTTCAGCTCTCTACAGCCTCTCCTGTTGGAATGATCGCGGCTGCATCACCCAAAGGGAATAAGAGAGACGGAAACCACTCTGCACAGTTGCAGCTAACCATCGGGTCATTGGAAAAAACCAACATGAGGGAGAAGAATGAGGAGAAGTCATTGGGAGAAAGGGTTCAAGAAGAGGCACGTGAACAGCTGAGGATAGCCGTGGCAGAAAAAGCGTATGCGGAAGAGGCAAGGAAACAAGCCAAGAGGCAGATGGAGCTGGCGGAACTCGAGTTCACTAACGCCAAAAGGATAAGACAACAAGCACTAGCGGAACTGGACAAAGCCTGTGCCTTGAAGGACCATGCAATCAAACAGATCAATTCAACCATGCTTCAAATCACTTGCCTTGCTTGCAAACACCATTTCCAATCGCGAACCATAACGTGTGCTGCTCCACCGGACAAGACCTCTTTCTTGTTAAGCTATATAGCAACAGAAGGTGGCCAAGTTGGAAAACATCGTGTCAAAGCCATTAACTATTAG 1320 0.4977 MASVVRIDMLVNNSSPSEPFSCVQNATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGQLGAETQAVQAAACLSRTASSPSSENNFSTDTPWQTGVVIPKPTVTVVEPASFTNPTTAQTNNDNNKNKVNKLQPNLELQLSTASPVGMIAAASPKGNKRDGNHSAQLQLTIGSLEKTNMREKNEEKSLGERVQEEAREQLRIAVAEKAYAEEARKQAKRQMELAELEFTNAKRIRQQALAELDKACALKDHAIKQINSTMLQITCLACKHHFQSRTITCAAPPDKTSFLLSYIATEGGQVGKHRVKAINY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00629 439 SUPERFAMILY beta-beta-alpha zinc fingers 57 83 IPR036236 -
Spst3g00629 439 Gene3D Classic Zinc Finger 122 201 - -
Spst3g00629 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Spst3g00629 439 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Spst3g00629 439 Gene3D Classic Zinc Finger 38 101 - -
Spst3g00629 439 SMART c2h2final6 137 164 IPR013087 -
Spst3g00629 439 SMART c2h2final6 60 82 IPR013087 -
Spst3g00629 439 SMART c2h2final6 101 131 IPR013087 -
Spst3g00629 439 FunFam protein indeterminate-domain 12-like 39 107 - -
Spst3g00629 439 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 385 IPR031140 -
Spst3g00629 439 Coils Coil 336 363 - -
Spst3g00629 439 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00629 Spst-Chr3 9863866 9866077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00629 27 424 C2H2 Transcription Factor Family AT2G01940 54.369 6.25e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g00629 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00629 K25871 - gmx:100800187 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00629 3 9863866 9866077 Spst3g00629 3 9863866 9866077 ECH
Spst3g00629 3 9863866 9866077 Spst4g02883 4 68524314 68527040 PCT