Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00623 ATGGAGTACGGGAGTGGAGGCTGTGGGTCCCAGTCTACTGGGGAACATGATGGTTCCGATTCCCAAGAGAAGAGAAAGCGTTATCATCGTCATACTGCCAACCAGATTCAGAGGCTTGAGTCAATGTTCAAAGAGTGCCCCCATCCCGATGAGAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTAGACAGATCAAGTTCTGGTTTCAGAACAGAAGGACCCAAATGAAGGCCCAGCACGAAAGAGCTGACAACTGTACTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCTATCAGAGAGGCTTTGAAGAATGTTATCTGCCCTTCGTGTGGTGGCCCTCCTCTCAATGATGATTCCTATTTCGACGACCAAAAGTTGCGATTAGAGAATGCCCACCTCAAAGAAGAGCTTGATAGAGTATCTAGCATCGCTGCCAAGTATATTGGAAGACCAATTTCCCAACTCCCGCCTGTTCAGCCTATCCATATATCGTCTCTGGAGTTGTCGATGGCGTGTTTTGGAAACCAAGGGATGATGGGTCATGTTCCTGCACCTTCTCCCTCCCTTAATCTTGATCTTCTCCCTGCGGGGACATCCTCATCTGTGCCAAATATGCCTTATCACCCTCCTTGCCTTTCCGACATGGACAAGTCCCTTATGTCAGACATCGCTTCCAATGCCATGGAAGAATTTCTCAGGCTGGTGCAGACAAACGAACCCTTGTGGCTCAAGTCAAACATCTATGGGAGGGAAGTTCTTAGTTCTGATGCCTACGAAAGAATTTTCCCCAAGCCCAATAGTCGGACCAATAATCCTAATGTTCGCCTTGAAGCATCACGAGATTCTGCAGTCGTGTTGATGAATAGTTTATCCTTGACTAACATGTTTACGGACCCAAACAAGTGGACGGAACTTTTTCCTACTATTGTCTCAGTGGCAACGACAATTCAAGTTATATCTTCTGGGATGATGGGTGGTTCTTTGCAATTGATGTATGCAGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTACTCGGGAGTTCTACTTCCTGCGTTACTGTCAGCCAATTGAGAAAGGCACATGGGCAGTAGTGGACGTTTCTTATGATTTTCCCCATGATGGTCACTTTTGTCCTCAATTTCGGTGTCATCGTCGTCCTTCTGGTTGCTTGATCCAGGACATGCCTGACGGGCATTCCAAGGTTACTTGGGTTGAACACGTTGAGATAGAAGACAAAACTCTCCCTCATCGTTTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGGTTGCCACCCTCCAGAGAATGTGTGATAGACTGACTTATCTGATGGTTACTAGCAATCCAACCCGGGATAATCCTGGAGGAGTAATTTCATCTCCCGAGGGCAAGAAGAGCATGATGAACCTTGCTCAAAGGATGGTCACCAATTTCTGTGCCAGCATCAGCACGTCAAGTGGCCACCAATGGACCACGATCTCTGGGTTGAATGAAATCGTAATCAGAGTCACTGTCCACGACAGCTCAAATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACAATTTGGCTCCCCACCCCTCCATACACTGTCTTCAATTTCTTCAAGGACGAATCAAAAAGGCCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTGCAAGAGGTTGCCCAAATAGCAAATGGTTCACATCCTGGTAACTGCATATCAGTTCTTCGAGCTTTCAACACGAGTCAGAACATGTTAATACTCCAGGAGAGCTGCATAGATTCCTCTGGTGCACTTGTGGTTTATTGCCCAGTTGATCTGCCATCGATCAACATAGCAATGAGTGGAGAAGACACTTCGTGCATTCCCTTGCTACCAAATGGGTTTACCATTTTGCCGGATGGGCAGGCAGAGGAGGAGGAAGATGGGGCATCAACCAGTTCAAACGCAAACAGGAACATGGCAAGGTCTGGTGGTTCACTAGTCACAGTTGCATTTCAGATTCTAGTGAGTACCTCTCCATCTGCCAAACTGAACAAGGAGTCGGTGACAACTGTTAATAATCTCATTGGCTCCACTGTCCAGCAAATAAAGGCTTCATTGAGTTGTCCTATCTAG 2151 0.4682 MEYGSGGCGSQSTGEHDGSDSQEKRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLELSMACFGNQGMMGHVPAPSPSLNLDLLPAGTSSSVPNMPYHPPCLSDMDKSLMSDIASNAMEEFLRLVQTNEPLWLKSNIYGREVLSSDAYERIFPKPNSRTNNPNVRLEASRDSAVVLMNSLSLTNMFTDPNKWTELFPTIVSVATTIQVISSGMMGGSLQLMYAELQVLSPLVSTREFYFLRYCQPIEKGTWAVVDVSYDFPHDGHFCPQFRCHRRPSGCLIQDMPDGHSKVTWVEHVEIEDKTLPHRFYRNLIYSGMAFGAERWVATLQRMCDRLTYLMVTSNPTRDNPGGVISSPEGKKSMMNLAQRMVTNFCASISTSSGHQWTTISGLNEIVIRVTVHDSSNPGQPNGVVLSAATTIWLPTPPYTVFNFFKDESKRPQWDVLSNGNAVQEVAQIANGSHPGNCISVLRAFNTSQNMLILQESCIDSSGALVVYCPVDLPSINIAMSGEDTSCIPLLPNGFTILPDGQAEEEEDGASTSSNANRNMARSGGSLVTVAFQILVSTSPSAKLNKESVTTVNNLIGSTVQQIKASLSCPI 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00623 716 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Spst3g00623 716 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Spst3g00623 716 Pfam START domain 230 450 IPR002913 GO:0008289
Spst3g00623 716 CDD homeodomain 24 83 IPR001356 GO:0003677
Spst3g00623 716 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Spst3g00623 716 SUPERFAMILY Bet v1-like 221 452 - -
Spst3g00623 716 Gene3D - 260 450 IPR023393 -
Spst3g00623 716 FunFam Homeobox-leucine zipper protein GLABRA 2 229 450 - -
Spst3g00623 716 SUPERFAMILY Bet v1-like 472 709 - -
Spst3g00623 716 MobiDBLite consensus disorder prediction 1 31 - -
Spst3g00623 716 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Spst3g00623 716 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Spst3g00623 716 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 712 IPR042160 -
Spst3g00623 716 SMART START_1 229 451 IPR002913 GO:0008289
Spst3g00623 716 MobiDBLite consensus disorder prediction 1 16 - -
Spst3g00623 716 SMART HOX_1 23 86 IPR001356 GO:0003677
Spst3g00623 716 CDD START_ArGLABRA2_like 224 449 - -
Spst3g00623 716 Gene3D - 11 95 - -
Spst3g00623 716 ProSiteProfiles START domain profile. 220 454 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00623 Spst-Chr3 9807312 9810269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00623 20 715 Homeobox Transcription Factor Family AT1G73360 61.790 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g00623 START 1.9e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00623 K09338 - gmx:100796042 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00623 3 9807312 9810269 Spst4g02920 4 68847889 68851457 PCT