Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00618 ATGAATGGGAAAGCCTTCGTCTCCAAGGAGCTCAATGCCAAACACGCCAAGATCTTGGAAGGACTTCTCAAGCTGCCCGAGAACAGGGAATGTGCAGATTGCCGCAACAGGGCACCACGATGGGCTAGTGTGAACCTGGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTTCATATATCGAAGGTGCGGTCCACGACTTTAGATACGTGGTTGCCAGAGCAAATTTCTTTCATGCAATTTATCGGTAATGAAAAGTCAAATAAGCTCTGGGAGGCAGAAATGCCACCAAATTTTGATAGAAGTAAATTGGGAATTGACAAGTTTATCCGTGCCAAGTACGTGGAGAAAAGATGGGCTTCAAAAGATGAAATGCAATCAACGTCAAATGGAGGGTCTAGGAATGGTATTCTGAAGAACAACAGGAGACTTTCTCTTGAAGAAAGCGTCCTTGCTAACCACGTCGCACAAATTCTACCACCAACAACAACAAGAGCTCGCGGGGGTTTTATTGACATGCAGAAAAAGAATTCTCCTCCATTTAAAAGGCCATCCTCATCAGTTGATTTTGACAACTTGCTTTGCATCTATGACGATAACCAAGCCTTCTCAACCGTGCCTCCTTCAAGTTGGGCAACATTTGATTGTATGATAATTCATACTTATCACAATGTGTTGCTTAGTTCTCGTCACGTGGCGCCATCCCCACCTGTGAAACGATGTCGTTTAGATTGGCGCGCCAAAGCACAAAGGGTGGAGCAAATGGAAATTCGGGTGTGCAGCAACCGCACCTGCCGCAGACAGGGCTCATTTCAAACCCTAGAAACCCTCTGTGGGGTCGCTCCTCCAAACGTGACTGTAAAGTCGTGCGGGTGCTTGGGGCGGTGCGGTTCGGGCCCCAACCTGGTGGTCCTGCCCGATGGCCTCACCGTTGGCCATTGTGGAACGGCTGCTCGGGCTGCGGAGCTCATGGTCAATCTGTTTGCCGAAGCTGGCCATGACCCCAAGGCTTGTATGGATGCGCTTGCTTTGAGGAAGAGGGCGGACATTGAGTTTGCCAACCGAAATTTCACCCAGCTGAACTTCTGCTCTCACAGGTCATTTGTAAGGCTGGAATTGGGCAACTACTCTGGTGCTCTCCAAGATGCTGAAGAGGCTTTGGCATTAGCTCCCCGCTACACTGAGGTGACTCAGATTCTTCTCTTCTAA 1224 0.4877 MNGKAFVSKELNAKHAKILEGLLKLPENRECADCRNRAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQISFMQFIGNEKSNKLWEAEMPPNFDRSKLGIDKFIRAKYVEKRWASKDEMQSTSNGGSRNGILKNNRRLSLEESVLANHVAQILPPTTTRARGGFIDMQKKNSPPFKRPSSSVDFDNLLCIYDDNQAFSTVPPSSWATFDCMIIHTYHNVLLSSRHVAPSPPVKRCRLDWRAKAQRVEQMEIRVCSNRTCRRQGSFQTLETLCGVAPPNVTVKSCGCLGRCGSGPNLVVLPDGLTVGHCGTAARAAELMVNLFAEAGHDPKACMDALALRKRADIEFANRNFTQLNFCSHRSFVRLELGNYSGALQDAEEALALAPRYTEVTQILLF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00618 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 145 IPR044520 GO:0005096
Spst3g00618 407 SUPERFAMILY Thioredoxin-like 260 329 IPR036249 -
Spst3g00618 407 Gene3D Glutaredoxin 259 335 - -
Spst3g00618 407 SMART arf_gap_3 16 133 IPR001164 GO:0005096
Spst3g00618 407 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Spst3g00618 407 CDD ArfGap 19 119 - -
Spst3g00618 407 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Spst3g00618 407 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
Spst3g00618 407 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Spst3g00618 407 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Spst3g00618 407 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Spst3g00618 407 CDD TRX_Fd_family 262 329 - -
Spst3g00618 407 Gene3D Arf GTPase activating protein 3 133 IPR038508 -
Spst3g00618 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00618 Spst-Chr3 9768194 9773468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00618 19 138 C2H2 Transcription Factor Family AT4G05330 46.094 7.08e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00618 K12486 - gmx:100803735 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00618 3 9768194 9773468 Spst4g02935 4 68984161 68990406 PCT