Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00610 ATGAAGTTTAACATTGCAAATCCCACCACTGGATGTCAGAAGAAGCTGGAAATCGATGATGACCAGAAGCTTCGAGCATTTTGGGATAAGAGGATCTCTCAGGAGGTGCTTGGTGATGCCCTGGGCGAGGAGTTTAAAGGATATGTTTTTAAAATCACTGGTGGGTGTGACAAACAAGGCTTCCCCATGAAGCAAGGAGTGCTGACCCCTGGTCGTGTCCGACTCTTGCTCCATAGAGGAACTCCATGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGCAGAAGGAAGTCTGTCCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTTGGTGATTGTGAAGAAGGGTGAGAATGATTTGCCCGGTCTCACTGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCATCAAAAATCCGCAAGCTGTTTAACCTGTCCAAGGAGGATGATGTGAGAAAGTATGTTAACACATACCGTCGAACCTTTACAACAAAAGCTGGGAAAAAAGTGAGCAAAGCTCCAAAAATTCAACGACTGGTCACTCCTTTGACCCTTCAAAGGAAGCGGGCAAGGATTGCTGACAAGAAGAAGAGAATTGCTAAGGCAAAATCAGATGCAGCCGAATATCAGAAACTCCTTGCTTCCAGATTGAAGGAGCAGAGAGAACGCCGGAGTGAGAGCTTGGCCAAGCGAAGATCCAAACTTTCCATTGCTTCCAAACCATAA 738 0.4702 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKRRSKLSIASKP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00610 245 Coils Coil 189 216 - -
Spst3g00610 245 MobiDBLite consensus disorder prediction 222 237 - -
Spst3g00610 245 Gene3D - 133 234 - -
Spst3g00610 245 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Spst3g00610 245 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Spst3g00610 245 MobiDBLite consensus disorder prediction 222 245 - -
Spst3g00610 245 PANTHER 40S RIBOSOMAL PROTEIN S6 1 239 IPR001377 GO:0003735|GO:0005840|GO:0006412
Spst3g00610 245 PIRSF RPS6e 1 245 IPR014401 GO:0003735|GO:0005840|GO:0006412
Spst3g00610 245 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00610 Spst-Chr3 9713793 9716253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00610 1 245 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.764 7.61e-119 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00610 K02991 - gmx:100786559 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00610 3 9713793 9716253 Spst6g00783 6 7086943 7089131 PCT