Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00609 ATGGACACAAGAACTAGCAAAGTTGCTAGGGACAAAAGGAAACAAGTAAGACAAAAGAGTAAAAGTGTTGTTGCCATGGCTCCTTTGGTACCAACAAAAGGAATAAAAAGGGGACAATTTGTTCCTGGTGGGGGATCAAATGAGAATATCATAGCCAACCAAGATAGCAGTACCAATGTTTTTTCCACCCCAGATGGGAAGAATTTAGAAGAAGTTTTGACAAAGCAGTTGAAGAACAGCGATGTTACCATCCTAGGTCGGATTGTGCTTCCAAAGAGGGAGGCTGAGGCGAAGCTTCCACCATTGACAGACAAGGAAGGAAAGGATATTATGCTTATGGATGTTTATTCTGGGGTGTCATGGACCTTGAGATACAAGTATTGGTCTAATAACAGAAGTAGAATGTATGTTCTGGAAAATGCTGGGGAATTTGTGAACCATTATGGACTACAGATGGGAGATTTTATAACCATTTATGTGGACGAAGAGAAAAACCTGTATGTGTGGGCTAGAAAAAAAATAATTGTAGAAGCACCAGTGTCCTTGGATACACATGACACTGACAACTATAACAATATGCACCAATTTGCAAATGAAGATGTGGAGATTTTTCCAAAGGAGCTTAACCAGGAGAAAGAAGTTGAAGATGCTAACAAGCTTTTGACCTCATTCAATGGTGGTGGGAGTTCTTCATGTAGAGCAGAACTACGTATGAGTATGGCAGAGAATGATGTTGAAGTGTTGAACATTACTGCAAAAGGGGCACCAAGCCAAGAAATTGTAGAAGCCACGCCAATAGCACCAACAACACCCCACAATGGTCGTAACATGTTGATAAGTGATGAAGATGTCTATGAGGGACTTGATAATATCTTTGAAATTGAGAATAATTTTCATAGCTTTGACTACTTGAAAGATTTCAGGATGTGA 930 0.3978 MDTRTSKVARDKRKQVRQKSKSVVAMAPLVPTKGIKRGQFVPGGGSNENIIANQDSSTNVFSTPDGKNLEEVLTKQLKNSDVTILGRIVLPKREAEAKLPPLTDKEGKDIMLMDVYSGVSWTLRYKYWSNNRSRMYVLENAGEFVNHYGLQMGDFITIYVDEEKNLYVWARKKIIVEAPVSLDTHDTDNYNNMHQFANEDVEIFPKELNQEKEVEDANKLLTSFNGGGSSSCRAELRMSMAENDVEVLNITAKGAPSQEIVEATPIAPTTPHNGRNMLISDEDVYEGLDNIFEIENNFHSFDYLKDFRM 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00609 309 ProSiteProfiles B3 DNA-binding domain profile. 73 174 IPR003340 GO:0003677
Spst3g00609 309 SMART B3_2 73 174 IPR003340 GO:0003677
Spst3g00609 309 SUPERFAMILY DNA-binding pseudobarrel domain 73 172 IPR015300 -
Spst3g00609 309 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g00609 309 Pfam B3 DNA binding domain 74 173 IPR003340 GO:0003677
Spst3g00609 309 Gene3D - 62 178 IPR015300 -
Spst3g00609 309 CDD B3_DNA 73 168 IPR003340 GO:0003677
Spst3g00609 309 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 180 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00609 Spst-Chr3 9707255 9710309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00609 62 167 B3 DNA Binding Superfamily AT1G28300 63.208 1.27e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst3g00609 B3 6.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00609 K09287 - gmx:102662409 247.284