Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00608 ATGGCCGCACCTTCTCTTTCCTCCGCTCTCAATTCCCTCTCCCTCTCCGCCTCTTCCCGCTTCTCTCTCCTCCCCTCACCACCCCACACTCTCTCCCTCCTCTTCGCCAAACCCCAACACCACCCTTCCGTCCTCTGCGTCAAATCCAAACCCTCCGATGACATTGATACCTCCTTCTTCGACAACCTTAACCCGCAGGAAGACATCACCTTCAACCCTCCGGAGCCTCCGGAGGACTTCGTCGCCCCTCCCTCCTTCGACGATGGCCCCCTCGAGACGGAGGAGGAGATCGCCGCCGCCTACGAGGAGCTTTACGGCCCCGCCTTCAGCGGCGTCTCTGTGCTCGGGAATGACGTGTTCGTGATGGACTCCCAGTTGAAGCAGGACACCGGGTTCGGGTCCGGCGCGAAGAAGGAGAAGGTCCGCGACGGGTTCGAAGAGAGGGTTGTCCAGGTGAGAAGGGTGACGAAGGTTGTTAAGGGAGGGAAGCAGTTGCGCTTCAGGGCCGTCGTCATTGTGGGCGACAAGAAGGGCCAGGTCGGCGTGGGAGTTGGCAAGGCCAAGGAAGTCATCACTGCTGTTCAGAAGTCCGCCACCGATGCCAGGAGGAACATTGTGAAGGTGCCTATGACTAAGTACTCCACTTTTCCCCATAGATCTGACGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCTGCTTCTCCCGGTACTGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCTGGAGTTGAGAATGCTTTGGGAAAGCAAATAGGGAGTAATAATGCACTCAACAATGCCAGAGCAACAATCATTGCTGTGCAGAAAATGAAGCAGTTTCGTGAGGTTGCTGAGGAGCGCGGAATTCCAATGGAAGAGTTATGGAAGTAA 906 0.5585 MAAPSLSSALNSLSLSASSRFSLLPSPPHTLSLLFAKPQHHPSVLCVKSKPSDDIDTSFFDNLNPQEDITFNPPEPPEDFVAPPSFDDGPLETEEEIAAAYEELYGPAFSGVSVLGNDVFVMDSQLKQDTGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVITAVQKSATDARRNIVKVPMTKYSTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATIIAVQKMKQFREVAEERGIPMEELWK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00608 301 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 138 296 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Spst3g00608 301 ProSiteProfiles S5 double stranded RNA-binding domain profile. 145 208 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Spst3g00608 301 Hamap 30S ribosomal protein S5 [rpsE]. 122 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Spst3g00608 301 Gene3D - 133 207 - -
Spst3g00608 301 ProSitePatterns Ribosomal protein S5 signature. 162 194 IPR018192 -
Spst3g00608 301 SUPERFAMILY dsRNA-binding domain-like 141 210 - -
Spst3g00608 301 FunFam 30S ribosomal protein S5 210 301 - -
Spst3g00608 301 Gene3D - 211 300 IPR014721 -
Spst3g00608 301 FunFam 30S ribosomal protein S5 134 206 - -
Spst3g00608 301 Pfam Ribosomal protein S5, C-terminal domain 222 292 IPR005324 GO:0003735|GO:0005840|GO:0006412
Spst3g00608 301 NCBIfam 30S ribosomal protein S5 144 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Spst3g00608 301 Pfam Ribosomal protein S5, N-terminal domain 145 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Spst3g00608 301 SUPERFAMILY Ribosomal protein S5 domain 2-like 215 293 IPR020568 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00608 145 285 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 1.97e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00608 K02988 - gmx:100787105 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00608 3 9698755 9700859 Spst3g00608 3 9698755 9700859 ECH