Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00600 ATGGTTGAGCTATTGCATTCTTGGGGGATATTATTCATGGAGAACAACCCTAGTTCATCAAGAAATGATAGAAAATTCGTTGAGAGGACTAGAAGAAATCAAATGAAGGATCTATTCTCCAATCTCAACTCAGTTATGCCTCATCAAAGTTCAAGGGAGGGGATTCCACGGTCAGATCAGATAGGTGAAGCCACAAACTACATAAAGAATTTACAGATTAAGCTGGAGAAAATGAAGGAGAAAAGACACAACCTAACAGACATTGAAAGGTCAAAAAATGGTAGCATGAATATGGGATTTTGTCCAGAATTTAAGATCCAACAAATGGGTTCAGTCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTGTCAATTCATGTTCAATGAGACCATTCGTATCATTCAAGAAGAAGGATCAGATATAGTCAATGCCAGTTACACAGTCGTTGAAAATGCAGTTTTCCATACAATACACTGTCAGGTAGATGAATCTGCCAATGAAGCTTTGAGAATATCAGAGAAACTGAAGAATTATGGCAATGGTTGGTTGGATAACTCTGAGTGGAAGCGCATAATCTATGTTCTCAACCGGTATGAACCAGTGAAGGCAGGGTTACAACTTTACTGCACTTTTGATAGTAAAACCACCACTTTAGGGTAA 660 0.3848 MVELLHSWGILFMENNPSSSRNDRKFVERTRRNQMKDLFSNLNSVMPHQSSREGIPRSDQIGEATNYIKNLQIKLEKMKEKRHNLTDIERSKNGSMNMGFCPEFKIQQMGSVLEVVLVTGLDCQFMFNETIRIIQEEGSDIVNASYTVVENAVFHTIHCQVDESANEALRISEKLKNYGNGWLDNSEWKRIIYVLNRYEPVKAGLQLYCTFDSKTTTLG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00600 219 Gene3D - 12 100 IPR036638 GO:0046983
Spst3g00600 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 19 177 - -
Spst3g00600 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 19 71 IPR011598 GO:0046983
Spst3g00600 219 Coils Coil 61 88 - -
Spst3g00600 219 Pfam Helix-loop-helix DNA-binding domain 22 72 IPR011598 GO:0046983
Spst3g00600 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 84 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00600 Spst-Chr3 9623465 9633763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00600 15 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.984 1.06e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g00600 HLH 9.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00600 - - gmx:100810793 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00600 3 9623465 9633763 Spst6g00778 6 7042106 7043028 PCT