Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00590 ATGGTTGTTGAACTAGGCAGTGAACCGGGGAAGATGCAAAATCAACCAACAGAGAAAGAAGAAGACGATGAAGGCCCACCACCGGGGTGGCAACCAATCCCCACTCACCCACCTCCACAGCCACCGCAATCGCAACCGCCATTGCCACGTCCATGTTGGGGTCAGATGGTTTGCGGTTCTTGTCATCGCCTGCTTTCATATCCACGTGGTGCCAAATATGTTAAATGTTCATGCTGTCAGACTGTCAACATTGTATTAGAAGGTTGTTTATCTCTCATTTGCATTCCTACCATCTCACTGGAGCGTACCTCTGCTCCAAGTCTCAATTTTGAATTTCATGTTGGATTATGGATTTGA 357 0.4734 MVVELGSEPGKMQNQPTEKEEDDEGPPPGWQPIPTHPPPQPPQSQPPLPRPCWGQMVCGSCHRLLSYPRGAKYVKCSCCQTVNIVLEGCLSLICIPTISLERTSAPSLNFEFHVGLWI 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00590 118 Pfam LSD1 zinc finger 58 82 IPR005735 -
Spst3g00590 118 MobiDBLite consensus disorder prediction 27 48 - -
Spst3g00590 118 NCBIfam zinc finger domain, LSD1 subclass 55 85 IPR005735 -
Spst3g00590 118 PANTHER PROTEIN LSD1 18 87 IPR040319 -
Spst3g00590 118 MobiDBLite consensus disorder prediction 1 48 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Spst3g00590 zf-LSD1 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00590 - - vun:114178687 88.9669