Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00586 ATGGCTTTTGAGCACTGCGTTTCGCAGCAATGGAAAACCATCCCAAGCCCCATGACCGTGACAGAAAATTTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTTGTCACTCTTTGTGGTCACCTCTACTGCTGGCCCTGCATCTACAAGTGGCTCCACTTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTTTGCAAGGAAGATATATGCCACACGACAATGGTTCCTCTCTATGGACGTGGCCAGGCCATAGCTCATAGTGACCGTGATGTGAAGGCTTCCTATAGAGGCATTTTCATTCCACCAAGACCATCTGCTTTGGGTACCCAAGCTCTCATGCCAACATCGTCTCAAAGTGGTCAGCAACTTCCATATCGCAATCCTTATCAGAGTCAGCATTTCAACCCTCCTTTATACGAAGAACAGGATGGATCATCATCACAAGTTCTCAATCCTGGTACCATGGCACCCGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCCGAGTCTTTGGCAACTCAGAAAATTTATACACTTACCCAAACTCTTACCACCTGGCAGGAAGTAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAGGCAGACAAATCACTAAACAGAATTTCAATTTTTCTCTTCTGTTGCTTCCTTCTGTTTCTTATTTTCAAAGTTTTGAGCACTTGTTGGTTGCTGAGAACATATCAACTCGACTCCAGAGACATATATCGCAAGATGATTGATGATAGACTGAGACATTTGGTCTTTCTCAAGTCCAACTTTACGTTCTCTGATGATGTTGGTGGTCCATTTGGACTCTGGAGGTTTAGGTTTCAATATGTTAATGTTGGCCAGTTGGCAATGGCTTTTCTAAGCAATGCCATCACAATTCTCTTACTCACCAGCAATGTTTTGTACTGTTTAGATGCATATGATGAGTAG 987 0.4428 MAFEHCVSQQWKTIPSPMTVTENFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHFQSASLAPDEHPQCPVCKEDICHTTMVPLYGRGQAIAHSDRDVKASYRGIFIPPRPSALGTQALMPTSSQSGQQLPYRNPYQSQHFNPPLYEEQDGSSSQVLNPGTMAPGFPHLVVGMFGEMFYTRVFGNSENLYTYPNSYHLAGSNSPRLRRQEMQADKSLNRISIFLFCCFLLFLIFKVLSTCWLLRTYQLDSRDIYRKMIDDRLRHLVFLKSNFTFSDDVGGPFGLWRFRFQYVNVGQLAMAFLSNAITILLLTSNVLYCLDAYDE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00586 328 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Spst3g00586 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Spst3g00586 328 SUPERFAMILY RING/U-box 22 90 - -
Spst3g00586 328 CDD RING-HC_AtRMA-like 28 77 - -
Spst3g00586 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 106 IPR013083 -
Spst3g00586 328 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
Spst3g00586 328 SMART ring_2 30 76 IPR001841 -
Spst3g00586 328 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Spst3g00586 328 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00586 Spst-Chr3 9462797 9464768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00586 7 225 C3H Transcription Factor Family AT4G27470 39.286 4.92e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00586 K10666 - gmx:100779793 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00586 3 9462797 9464768 Spst6g00765 6 6885613 6886305 PCT