Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g00586 | ATGGCTTTTGAGCACTGCGTTTCGCAGCAATGGAAAACCATCCCAAGCCCCATGACCGTGACAGAAAATTTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTTGTCACTCTTTGTGGTCACCTCTACTGCTGGCCCTGCATCTACAAGTGGCTCCACTTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTTTGCAAGGAAGATATATGCCACACGACAATGGTTCCTCTCTATGGACGTGGCCAGGCCATAGCTCATAGTGACCGTGATGTGAAGGCTTCCTATAGAGGCATTTTCATTCCACCAAGACCATCTGCTTTGGGTACCCAAGCTCTCATGCCAACATCGTCTCAAAGTGGTCAGCAACTTCCATATCGCAATCCTTATCAGAGTCAGCATTTCAACCCTCCTTTATACGAAGAACAGGATGGATCATCATCACAAGTTCTCAATCCTGGTACCATGGCACCCGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCCGAGTCTTTGGCAACTCAGAAAATTTATACACTTACCCAAACTCTTACCACCTGGCAGGAAGTAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAGGCAGACAAATCACTAAACAGAATTTCAATTTTTCTCTTCTGTTGCTTCCTTCTGTTTCTTATTTTCAAAGTTTTGAGCACTTGTTGGTTGCTGAGAACATATCAACTCGACTCCAGAGACATATATCGCAAGATGATTGATGATAGACTGAGACATTTGGTCTTTCTCAAGTCCAACTTTACGTTCTCTGATGATGTTGGTGGTCCATTTGGACTCTGGAGGTTTAGGTTTCAATATGTTAATGTTGGCCAGTTGGCAATGGCTTTTCTAAGCAATGCCATCACAATTCTCTTACTCACCAGCAATGTTTTGTACTGTTTAGATGCATATGATGAGTAG | 987 | 0.4428 | MAFEHCVSQQWKTIPSPMTVTENFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHFQSASLAPDEHPQCPVCKEDICHTTMVPLYGRGQAIAHSDRDVKASYRGIFIPPRPSALGTQALMPTSSQSGQQLPYRNPYQSQHFNPPLYEEQDGSSSQVLNPGTMAPGFPHLVVGMFGEMFYTRVFGNSENLYTYPNSYHLAGSNSPRLRRQEMQADKSLNRISIFLFCCFLLFLIFKVLSTCWLLRTYQLDSRDIYRKMIDDRLRHLVFLKSNFTFSDDVGGPFGLWRFRFQYVNVGQLAMAFLSNAITILLLTSNVLYCLDAYDE | 328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g00586 | 328 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 77 | IPR001841 | - | |
Spst3g00586 | 328 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 8 | 236 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Spst3g00586 | 328 | SUPERFAMILY | RING/U-box | 22 | 90 | - | - | |
Spst3g00586 | 328 | CDD | RING-HC_AtRMA-like | 28 | 77 | - | - | |
Spst3g00586 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 106 | IPR013083 | - | |
Spst3g00586 | 328 | FunFam | E3 ubiquitin-protein ligase RMA1H1 isoform A | 6 | 131 | - | - | |
Spst3g00586 | 328 | SMART | ring_2 | 30 | 76 | IPR001841 | - | |
Spst3g00586 | 328 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
Spst3g00586 | 328 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 76 | IPR018957 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g00586 | Spst-Chr3 | 9462797 | 9464768 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g00586 | 7 | 225 | C3H Transcription Factor Family | AT4G27470 | 39.286 | 4.92e-43 | 147 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst3g00586 | K10666 | - | gmx:100779793 | 422.935 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst3g00586 | 3 | 9462797 | 9464768 | Spst6g00765 | 6 | 6885613 | 6886305 | PCT |