Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00585 ATGGCGAGTCTGTTCGGCTCATCGTCTTCCGCTTCGTTCAAGATGAGAGTCACCAACACGCCTTCCAGCGACCTCGTCCTCACCAACCTCGCCTTCTGTTCCCCCTCCGATCTTCGCAACTTCGCCGTCCCCGGCAGCGACCAGATTGGGTTGAACTCCATTCAACGGCGGTGTGCCAAAGTTTCCACTGGTGATTCCGTACAATTGACCCGATTTGTGCCTCCTGACAACTTCAATCTCGCACTGCTAACCATTGAATTGGAATTTGTCAAAAAGGGGAATAAGAGTGAGCAGATTGATGCTGTTCTACTGGCTAAGCAACTCCGGAAAAGATTTATAAACCAGGTTATGACTGTGGGGCAGAAAGTGTTAGTTGAGTACCATGGAAATAACTATTGCTTTACCGTCAATAATGCTGCTGTTGAAGGTCAAGAAAAGTCTAATTCTCTTGAAAGAGGGATCATTTCTGATGACACATACATTGTTTTTGAAACATCACGGGATAGTGGAATTAAGGCGAAATCTGAGAAGAGTCTTGAGGAAGCTATCTACAGTGCTGAGGCAGCACTGATTTCACAGATTGTCAATCAACGGGAGGGTGCAACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGTCACTGGGTATTGGTGGTTTGAGTGCAGAGTTTGCTGATATATTTCGAAGAGCTTTTGCCTCTCGCGTTTTTCCTCCCCATGTGACATCTAAACTAGGAATCAAACATGTGAAGGGCATGCTTCTTTATGGACCTCCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAACGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTGTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTTAGAGACCTTTTTGCTGATGCTGAACAGGATCAGAGGACCAGAGGGGATGAAAGTGATTTACATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGACAGCATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAAATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACGAAAAATTATAGTGGTGCAGAACTTGAAGGTGTGGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGATGATCTCACTAAGCAAGTGGAGGAAGAGAACATTAAGGTCACGATGGACGACTTTTTGAATGCACTGCAAGAAGTTATTCCCGCATTTGGTGCTTCAACTGATGATCTTGAAAGATGCAGTGTGGAAAACTGTGAGGAAGGACTCCATGGCATGGTGGACTGTGGTAGTCGACATCAGCACATTTATCAAAGATCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCACTTGTCTTCTGGAAGGATCCCGTGGCAGTGGTAAAACTGCACTGGCAGCTACTATTGGTATTGACAGCGATTTCCCGTATGTCAAGATAGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAGGTCACCCTTGAGTGTCATAGTTCTTGATGACATTGAGAGATTATTGGAGTATGTAGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTGGTTCTGCTCAAACGGCTTCCTCCAAAGGTTTCTGTTCATCCTTGTTCTGGCAAAAAACTCATGGTTATTGGCACAACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACCTTCTCTGTTACTTACCACGTTCCGACCTTGAACACAAAGGATGCTCGGAAGGTCCTCGAAGCATTGAATGTGTTCTCCGATGAAGATATTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAGGAAGCTATATATGTTGATTGAGATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCAGAGGCTATCTATTCTGGCAAAGAGAAGATTAATATTTCTCATTTCTATGATTGCCTCCAGGATGTTGTTAGATTATAA 2268 0.4246 MASLFGSSSSASFKMRVTNTPSSDLVLTNLAFCSPSDLRNFAVPGSDQIGLNSIQRRCAKVSTGDSVQLTRFVPPDNFNLALLTIELEFVKKGNKSEQIDAVLLAKQLRKRFINQVMTVGQKVLVEYHGNNYCFTVNNAAVEGQEKSNSLERGIISDDTYIVFETSRDSGIKAKSEKSLEEAIYSAEAALISQIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKQVEEENIKVTMDDFLNALQEVIPAFGASTDDLERCSVENCEEGLHGMVDCGSRHQHIYQRSMLLVEQVKVSKGSPLVTCLLEGSRGSGKTALAATIGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYRSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKVSVHPCSGKKLMVIGTTSELGFLDSIGFCDTFSVTYHVPTLNTKDARKVLEALNVFSDEDIDSAAEALNDMPIRKLYMLIEMAAQGEQGGSAEAIYSGKEKINISHFYDCLQDVVRL 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00585 755 Pfam ATPase family associated with various cellular activities (AAA) 542 662 IPR003959 GO:0005524|GO:0016887
Spst3g00585 755 Pfam ATPase family associated with various cellular activities (AAA) 254 394 IPR003959 GO:0005524|GO:0016887
Spst3g00585 755 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
Spst3g00585 755 CDD RecA-like_NSF-SEC18_r1-like 217 393 - -
Spst3g00585 755 Gene3D - 503 677 IPR027417 -
Spst3g00585 755 PANTHER VESICULAR-FUSION PROTEIN NSF 12 754 IPR039812 GO:0016887|GO:0035494
Spst3g00585 755 FunFam Vesicle-fusing ATPase 76 173 - -
Spst3g00585 755 SUPERFAMILY Cdc48 domain 2-like 75 177 IPR029067 -
Spst3g00585 755 FunFam vesicle-fusing ATPase isoform X1 500 677 - -
Spst3g00585 755 Gene3D - 76 172 - -
Spst3g00585 755 SMART AAA_5 537 682 IPR003593 GO:0016887
Spst3g00585 755 SMART AAA_5 250 397 IPR003593 GO:0016887
Spst3g00585 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 493 IPR027417 -
Spst3g00585 755 FunFam Vesicle-fusing ATPase 396 483 - -
Spst3g00585 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 527 724 IPR027417 -
Spst3g00585 755 Gene3D - 396 483 - -
Spst3g00585 755 FunFam Vesicular-fusion ATPase SEC18 206 396 - -
Spst3g00585 755 Pfam Cell division protein 48 (CDC48), domain 2 98 164 IPR004201 -
Spst3g00585 755 SUPERFAMILY ADC-like 12 72 IPR009010 -
Spst3g00585 755 Gene3D - 200 395 IPR027417 -
Spst3g00585 755 Pfam AAA+ lid domain 421 476 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00585 Spst-Chr3 9422354 9435094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00585 245 461 Calmodulin-binding Proteins AT3G56690 38.914 3.44e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00585 K06027 - gmx:100779259 1259.97