Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00583 ATGGCAGATAATAATGTGTTAGAGCTGAACCTTGGTTTAGGCAACAACAACAACAACAACAGCAACTTTTTTGGTGGTCATGCACATGCAGTGCAGTCACCAAGGCAAAGGTGCCCTGCACCATTTCTGATCAAGACTTACGATTTGTTGGAAGAAGGTGAGAGTGAAGAGAGCAAACAAATTGTGTCGTGGAATGCAGAAGGAACTTCCTTTGTTGTGTGGTCTCCTGCTGAATTCTCTGAGCTCACCTTGCCTAGATATTTCAAGCACAACAATTTCTCTAGCTTCATTCGCCAATTGAACACATATGGATTTAAGAAAATATCATCGAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGTCCATGTTAGGTGAAATCACAAGGAAAAAGTGCGAGGCAAGTGTTTTTCCTGCATACCTCAAGTCTTCTTCTGAGGAAAATGCAACAACAAGTTCCACAGAAGAAAACAATCAGCAACTACTTATGGAGGAGAACAAGAACCTGAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGATGAATGCAAAGCACTTGAAATGAAGCTGTTGGCATGCCTCTCTCAGTTCATGGACACCCACCAAAGTAAAGTTAGGAGACTCTGTTAA 642 0.4174 MADNNVLELNLGLGNNNNNNSNFFGGHAHAVQSPRQRCPAPFLIKTYDLLEEGESEESKQIVSWNAEGTSFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRSMLGEITRKKCEASVFPAYLKSSSEENATTSSTEENNQQLLMEENKNLKKERLELQMQIDECKALEMKLLACLSQFMDTHQSKVRRLC 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00583 213 Gene3D - 34 135 IPR036388 -
Spst3g00583 213 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00583 213 FunFam Heat stress transcription factor A-6b 35 135 - -
Spst3g00583 213 SMART hsfneu3 38 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00583 213 Pfam HSF-type DNA-binding 42 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00583 213 Coils Coil 156 193 - -
Spst3g00583 213 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 188 IPR027725 -
Spst3g00583 213 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00583 213 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00583 213 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g00583 213 SUPERFAMILY "Winged helix" DNA-binding domain 39 134 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00583 Spst-Chr3 9416028 9417610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00583 33 207 HSF AT5G62020 33.171 1.48e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst3g00583 HSF_DNA-bind 2.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00583 K09419 - gmx:100789792 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00583 3 9416028 9417610 Spst3g00583 3 9416028 9417610 ECH