Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00577 ATGTATGTAGCTTCCATGCGTAAGTCTTTCAAGGACTCCTTGAAAGTACTTGAAGCTGATATCCAACACGCCAATACCCTGGCGTCAGATTTTCCAAGGGATTATGATGGTGCGTGCCTTCAGATGAGGATGTCATACAGTCCAGCCGCGCACCTGTTTCTTTTTCTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGAACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCGTCTTTATTGCAACTTCAAAGAGGTGTCACTGATACTGAGGATAAGAAGCAGAAGGTTGTATGCATGGAGAGGTACCGCAGAAGAGATGATGAGGATTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATACTAAGATTGTGTTACCCAACTGCAACCATGCCATGTGCCTGAAATGTTATCGAGAATGGCGAACTATATCACAATCATGCCCATTTTGCCGAGACAGTCTGAAGAGAGTGAACTCAGGTGATCTGTGGGTATTCACTGATAGAAGGGATGTGGTAGATATGGCAACAGTGACAAGGGAGAATCTAAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCGTTCCAGATTCCCTTTTTGATGCATATGACTCTCACATAAGGTAA 744 0.4234 MYVASMRKSFKDSLKVLEADIQHANTLASDFPRDYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQRGVTDTEDKKQKVVCMERYRRRDDEDYRQSSDIDIEREDECGICMDMNTKIVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDAYDSHIR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00577 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Spst3g00577 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
Spst3g00577 247 PANTHER RING FINGER PROTEIN 41, 151 8 245 - -
Spst3g00577 247 FunFam RING/U-box superfamily protein 129 198 - -
Spst3g00577 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Spst3g00577 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Spst3g00577 247 SMART ring_2 151 188 IPR001841 -
Spst3g00577 247 SUPERFAMILY RING/U-box 140 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00577 Spst-Chr3 9377550 9380654 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00577 K25840 - gmx:100786183 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00577 3 9377550 9380654 Spst6g00750 6 6791048 6796113 PCT