Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00573 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGGAATCCTTCTCATACTCCTAATGAGATTGATGGCTTTCCACTTGATAATGTGAAGAACTTTTCTGATAAAGACCTGAGACTGGCCACTGATAACTATAATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAAATGGAAGACAGGTAGCAGTTAAGACACTTTCAGCTGGGTCAAAGCAGGGGGTTCGTGAATTTTTATCTGAAATTAAAACTATATCAAATGTTAGGCATCCAAACCTTGTTGAATTGGTTGGTTGCTGTGTTCAAGAAACTAATCGCATATTAGTGTATGAATATGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGTTCAAGAGGTTCAAATATCAGATTAGACTGGAGAAAAAGATCTGCTATTTGCATGGGTACCGCTAGAGGTCTTGCATTTCTTCACGAAGAACTTGTGCCACACATTGTGCATAGAGACATCAAGGCAAGCAACATACTACTTGACAGAGATTTCAACCCAAAAATAGGAGATTTCGGGTTGGCTAAATTATTTCCAGATGACATCACACACATTAGCACAAGGATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGGTGGCCAGTTAACCTTGAAGGCTGATGTATACAGTTTTGGGGTTCTTATACTTGAAATAATCAGTGGCAAAAGCAGTGCAAGGACAAACTGGGGAGGTTCTAACAAATTTCTCTTGGAATGGGCCTGGCAACTGTATGAAGAGGGGAGACTGTTGGAGCTTGTGGATCCAGACATGGTTGAGTTCCCTGAGGAAGAGGTAATTAGGTACATGAAGGTTGCTTTTTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCAATGATGTCCCAAGTTGTGGATATGCTGTCCAAGAACATAAGGCTGAATGAAAAGCTAATAACAGCACCAGGGTTTTTCCAGGATCCTGGAGCATCCTCTCAAAAAAAGTCATCCTATGGATCCACAAGCTATCAATTTAGCTCTAACCCTTCCAGTATTACTCAGTTGGCCCCACGGTGA 1104 0.4176 MSCGCFGASTLKKKRNPSHTPNEIDGFPLDNVKNFSDKDLRLATDNYNPSKKLGRGGFGTVYQGTLKNGRQVAVKTLSAGSKQGVREFLSEIKTISNVRHPNLVELVGCCVQETNRILVYEYVENNSLDRALLGSRGSNIRLDWRKRSAICMGTARGLAFLHEELVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTLKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYEEGRLLELVDPDMVEFPEEEVIRYMKVAFFCTQAAASRRPMMSQVVDMLSKNIRLNEKLITAPGFFQDPGASSQKKSSYGSTSYQFSSNPSSITQLAPR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00573 367 CDD STKc_IRAK 53 319 - -
Spst3g00573 367 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Spst3g00573 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Spst3g00573 367 FunFam cold-responsive protein kinase 1 18 122 - -
Spst3g00573 367 MobiDBLite consensus disorder prediction 336 367 - -
Spst3g00573 367 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 348 - -
Spst3g00573 367 SMART serkin_6 47 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00573 367 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Spst3g00573 367 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Spst3g00573 367 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00573 367 SUPERFAMILY Protein kinase-like (PK-like) 31 341 IPR011009 -
Spst3g00573 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Spst3g00573 367 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00573 Spst-Chr3 9303577 9308571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00573 10 366 Receptor kinase-like Gene Family AT1G56120 48.468 1.00e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst3g00573 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00573 - - gmx:100775344 698.738