Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00551 ATGGACAGCACGGATTCATCATCAGCCTCTCACCACCCTCATCTCCCTCCTGGGTTTCGCTTCCACCCCACCGACGAAGAACTCGTCGTTCACTACCTCAAGAGAAAAGCTGCTTCTGCACCCCTTCCCGTCGCCATCATCGCCGACGTTGATCTCTACAAGTTCGACCCTTGGGAGCTCCCAAGTAAAGCAACGTTTGGTGAACAAGAGTGGTACTTTTTCAGCCCAAGGGATCGGAAATACCCAAATGGGGTTAGGCCGAACAGAGCTGCTACTTCTGGTTATTGGAAGGCCACTGGAACTGACAAGCCTATACTAACATCTGATGGGCACCAGAAAGTTGGGGTTAAGAAAGCACTGGTTTTCTACGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCATGAGTATAGGCTTGTTCATGATTCTTTCAATTCAACCTCAAAACCTCCTCCTCTTGTTCCTCCAAACAAGAAAAATTCCCTCAGGCTGGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGCAGCACCTTAACAAGACCACCCTTGATGGAGCATGAAGAGGAGCTTTCAATGGAGAACATGCTTCCAACCATGTCAACTTTGTCAATGGCTACTAATACTACGCAAAATTCTAAACCTTCGAGGGGTACCAGTTATGGACCACTAGGACTTGAAAATGATGACAACTTCTTCGATGGGATCTTAGCCGTTGATAATAATAGCATGCAAAGCGGTTCTGATTCTCACCTTTTCTCTCCAAACTCAAAGGGTAGCAACTTCCCTGTGAAACGTGCACTCACATCACAACAACTTTGGAACGAGACAGGGTCTCCAGGGTCATCTTCTTCCTGCAAGCGATTCCATGGTGATCTTAACAGTGGAAGCAGCAACGCTGAGGAGAACGATTCCTTTGTTTCCTTGCTCAGCCAGTTTCCTCAGAACGCAACTTTCCAACCAAACGCGATTCATGGCTCCGGTGGGGATGGTGCGCAGAGACAACAACAGTTTCAACTTCCTGGGATAAATTGGAACTGA 1056 0.4716 MDSTDSSSASHHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPILTSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVHDSFNSTSKPPPLVPPNKKNSLRLDDWVLCRIYKKSNSSTLTRPPLMEHEEELSMENMLPTMSTLSMATNTTQNSKPSRGTSYGPLGLENDDNFFDGILAVDNNSMQSGSDSHLFSPNSKGSNFPVKRALTSQQLWNETGSPGSSSSCKRFHGDLNSGSSNAEENDSFVSLLSQFPQNATFQPNAIHGSGGDGAQRQQQFQLPGINWN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00551 351 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g00551 351 SUPERFAMILY NAC domain 9 178 IPR036093 GO:0003677|GO:0006355
Spst3g00551 351 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Spst3g00551 351 PANTHER NAC TRANSCRIPTION FACTOR 56 15 213 - -
Spst3g00551 351 MobiDBLite consensus disorder prediction 279 306 - -
Spst3g00551 351 Gene3D NAC domain 24 183 IPR036093 GO:0003677|GO:0006355
Spst3g00551 351 ProSiteProfiles NAC domain profile. 15 178 IPR003441 GO:0003677|GO:0006355
Spst3g00551 351 MobiDBLite consensus disorder prediction 323 351 - -
Spst3g00551 351 FunFam NAC transcription factor 56 24 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00551 Spst-Chr3 9025983 9027624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00551 5 351 NAC Transcription Factor Family AT1G61110 53.933 2.14e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g00551 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00551 - - gmx:100797132 618.616