Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00548 ATGGCGGATGATACGGTGGACTTTTCGAAACTGTTCCATGGTGGTGACGATGACGATGATGACATGTTTTATATAGATATTCAGACCGTTCAGAAGGTTCTCGATGAAGATGTTGATTATGATTTTCTGGAGGGCAAATTTATATTCGGAAAGCATCAGGCTTGTGTGCCTACGAATGACTTTTGTGAAAGAAAAAAAGGAAGGTCAATTCATGCACGGAGTGTTTACTCTGACGTGTCAGTCAATCTGTGCCTGCGTCATTTAGTTCCCACTCAGAGTGTGAATGTGAAGGTCCTGAATAGAGTATCATTTTGTGTTTCGGGACTGGATTTCAACTGCCTCCTTGACATAATAGATATTATCCTTATACCTTTTCATTTTATGGCCCAGCAGAAAATTCCCCAGGATTCTTCATCAAGAAATAATGCTTTACACAATAAAACTGGAATTCATGGTACTTTACCGATACAAAATGATGTGTCAGATTCTAGTGTCAGATGTTCAGTTGGTGTATCTGATTCCACAGGAAATTCTTGGTTTGATTGTGAACCTGAAAAGCAGGGACCCCGAGCTCAGGATTGCTCCTCCCCAAATGTTTTTCCTGATAATCTCAGAAACTCATTCTGTCCAGGTGAAAGTGATGAGGTTTTCAACACAGAAAGGACTGGAGTCTCTAAACATGAGGTACCTGCTTGTAGTGTAGAATCAAGTTTCCCTGAGGCACACTCAAACAATATATCAATTTGTGGAGATAATTTGAATCTGAGTCTGTGGAAGGGTGAAAATGAGAGCCAATTCAAGCATTTGGGAGAGGATGTTGAATTTGAAAGTGCTTCAATCAGTTCTATCGTCGACAGTGATGATGTACATATTGAAGGTTACGCTGAAGATATCATTGGTGGAGTTTCTGGGCAACAGGAAAATGATTCATGTACATCTTTTGAAGCATTTATGGATGCTGATACATCTTTTCATGTTGCAACTTCGAATTATTCTGCTATTGGTCAAGGTTCCCATGCTTCCAGTGATTTTACTGACTACCATGGATCTTCAACTTGTTACCAGGGAATGCATGATGGACCTTTTGTGGATGACTCTTCTCTTGCTATTTTGCCTAATGGCTTTTGTTCCCAATTGTTGCCAAATTATGAAATGATGAATAACATGAAGGCCGAAAATGTGGAGTTAAATGCTGATATTACATGTATGAGTAGTGGCATGCCGTCAAGCACTGCTGGGTGGATGTCTTTACAAGATAGTCAAAGCATGTTAACTGATAATGGTTATTCACCTTTTCATTCTGGCAATGTTATTTTTGATGACATGTCATCCCTGTCTCTTTCAGTTGGTGATTCATACATGCCATATGGAGACCATTACCAAAACAATTTTGAGGATGCTAAGTTCAATGTAGGCCAATCGGTGAAACAAACACCTGGTAATTTTTCTTCTGGAGGGTGTCAGGCTTACCAATGTTTTGATAATGAGGATAGTTATGCATTTATATCAGGGATATCCAATCAATATCAAGATAGCAATGGTGGAATTGCTAGTTTTCATGGAAACGTGGACAATTTGAATTTAAAATCTGAAAATATATCTTGGTCCCATACTCAGGCACTAATTACCCGTGAGACGCAGTTTGGTTGTGCTAGGAGAGGAGGGGTTCAACATAAACTTGTTGATTCTCATCTTTCAAAAGGAAAAATTGAGAATTTCCATGTTGAGGAGGACCCTGATGTTTGCATTATTGAAGACTTCAGTCATCCTGCTCCAACAAGCCAATCTGCAAACATTGGGAATTCATTTAATATATCTCAATCTTCTCCATATGCTGATTCTGAGTCTTACATGGTTGGAAGTACAAGGCTGAAGGCATGTGATGAGCGAAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTTTTAAGACATCAGCGAATTGCTTTATCATGGATGGTTCAAAAAGAAGCATCAAGTTTACATTGCTCTGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACTGTATCAACTATTGCATTAATATTGAAGGAAAGACCTCCATTACTTATTGGGGATGCCATTGCCCAAAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGATGTGCTTCCTCAGAATGGTAGAGTAAAGGAAGAATCTAATATTTGTGAGGATAAGTCAAGTCGATATCCAATCAAGAGCATGAGTTTGCATAATCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGCAGCAAGGTAACTAGTCAATCAAATCTCTCCGTGCTAGTATACCATGGAAGCAATCGGACAAGAGATCCTTATGAGGTTGCTAAGTATGATGTTGTCCTAACTACTTATTCCATTGTGAGCATGGAGGTCACTAAGCAGCCTTCAGCAGACAAAGATGATGAGACGAAGGAAAATTTTGAAGATCATGCTGTACCAAGTAAGAAAAGAAAATGTCCTTCTAATTCTAGTAAAAGTGGTAAGAAGAGATCAGATGATACAGTTCGCGAGGCTATTGCTCGGCCGCTTGCAAAGGTCACATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTCGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTATCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCGTATGATGTCTATACATCATTTTGTTCTACAATTAAGAACCTGATAAGCAGAAATCCAGCGAAAGGGTATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGCACCAAAGGTACACTTCTTGATGGGGAACCTATTATTTCCTTGCCGCCTAAACATATAGAGCTGAAAAAAGTTGATTTTTCAATGGAGGAACGTGATTTCTATTACAAACTAGAGGCCGATTCCCGGGCACAGTTCCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTTCTGCGGCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATATAATTCAACCTCTCTATGGAGATCTTCTGTGGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGAAATGTTTAGAGGCTTCCATGGCCCTCTGCAGCATTTGTAATGATCCTCCTGAAGATGCATTTGTTTCAGTTTGTGGCCATGTTTTCTGCAACCAATGCATATGTGAACATGTTACCGGTGTTGACAACCAGTGCCCTGCTGCAAATTGCAAAATTCGACTGAGCACATCTATGGTATTTTCAAAAGCCACTCTGAACAATTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCTCTGGTTCTGAAGAGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCGAAAATAAAGGCCGCACTTGAGGTTTTGAAGTCTTTGTCTAAGCCACAGTTCTATAAATCAAAAAGTACTTCTCAGCATAGCACTTTCAGGGAAGATAATGATTGCCCTGGGAAACCCTCCAATGCTAACAATGGGAAATCCTTCATAGATTCTCCTGAGAATCAAAATTTGTCTGATGATAATAGATGCCATAGTGATTCTGTTACTGTCGTCGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAATTCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCGAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCTGAGGTATCAGTTATAATCATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAATCTGGTGGTAGCTTGCCATGTTCTTATGCTCGATTTGTGGTGGAATCCTACAACTGAAGACCAAGCAATAGATCGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTTTGGCTCTGCAGCAAAAGAAGAGACAGATGGTTGCATCTGCGTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 4242 0.4055 MADDTVDFSKLFHGGDDDDDDMFYIDIQTVQKVLDEDVDYDFLEGKFIFGKHQACVPTNDFCERKKGRSIHARSVYSDVSVNLCLRHLVPTQSVNVKVLNRVSFCVSGLDFNCLLDIIDIILIPFHFMAQQKIPQDSSSRNNALHNKTGIHGTLPIQNDVSDSSVRCSVGVSDSTGNSWFDCEPEKQGPRAQDCSSPNVFPDNLRNSFCPGESDEVFNTERTGVSKHEVPACSVESSFPEAHSNNISICGDNLNLSLWKGENESQFKHLGEDVEFESASISSIVDSDDVHIEGYAEDIIGGVSGQQENDSCTSFEAFMDADTSFHVATSNYSAIGQGSHASSDFTDYHGSSTCYQGMHDGPFVDDSSLAILPNGFCSQLLPNYEMMNNMKAENVELNADITCMSSGMPSSTAGWMSLQDSQSMLTDNGYSPFHSGNVIFDDMSSLSLSVGDSYMPYGDHYQNNFEDAKFNVGQSVKQTPGNFSSGGCQAYQCFDNEDSYAFISGISNQYQDSNGGIASFHGNVDNLNLKSENISWSHTQALITRETQFGCARRGGVQHKLVDSHLSKGKIENFHVEEDPDVCIIEDFSHPAPTSQSANIGNSFNISQSSPYADSESYMVGSTRLKACDERNILRVALQDLSQPKSEVSLPEGLLAVPLLRHQRIALSWMVQKEASSLHCSGGILADDQGLGKTVSTIALILKERPPLLIGDAIAQKSELDSLNLDVDDDVLPQNGRVKEESNICEDKSSRYPIKSMSLHNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQSNLSVLVYHGSNRTRDPYEVAKYDVVLTTYSIVSMEVTKQPSADKDDETKENFEDHAVPSKKRKCPSNSSKSGKKRSDDTVREAIARPLAKVTWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYTSFCSTIKNLISRNPAKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKHIELKKVDFSMEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTSLWRSSVEMAKTLPQEKQISLLKCLEASMALCSICNDPPEDAFVSVCGHVFCNQCICEHVTGVDNQCPAANCKIRLSTSMVFSKATLNNCLSDQGCDNSPGCSGSEEEEFEPWSQSQPYESSKIKAALEVLKSLSKPQFYKSKSTSQHSTFREDNDCPGKPSNANNGKSFIDSPENQNLSDDNRCHSDSVTVVGEKAIVFSQWTRMLDLLEACLKNSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRQMVASAFGEDGTGDRQSRLTVDDLKYLFMM 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00548 1413 SMART ring_2 1096 1134 IPR001841 -
Spst3g00548 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 980 IPR027417 -
Spst3g00548 1413 ProSitePatterns Zinc finger RING-type signature. 1111 1120 IPR017907 -
Spst3g00548 1413 SMART ultradead3 654 957 IPR014001 -
Spst3g00548 1413 Gene3D - 868 981 IPR038718 -
Spst3g00548 1413 Gene3D - 753 845 IPR038718 -
Spst3g00548 1413 MobiDBLite consensus disorder prediction 1205 1249 - -
Spst3g00548 1413 MobiDBLite consensus disorder prediction 1223 1249 - -
Spst3g00548 1413 CDD DEXDc_SHPRH-like 658 980 - -
Spst3g00548 1413 SUPERFAMILY RING/U-box 1080 1143 - -
Spst3g00548 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1412 IPR027417 -
Spst3g00548 1413 SMART helicmild6 1272 1355 IPR001650 -
Spst3g00548 1413 Gene3D - 627 715 IPR038718 -
Spst3g00548 1413 Gene3D - 995 1413 IPR027417 -
Spst3g00548 1413 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 863 992 - -
Spst3g00548 1413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 673 942 IPR014001 -
Spst3g00548 1413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1249 1408 IPR001650 -
Spst3g00548 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1089 1146 IPR013083 -
Spst3g00548 1413 CDD SF2_C_SNF 1258 1365 - -
Spst3g00548 1413 ProSiteProfiles Zinc finger RING-type profile. 1096 1135 IPR001841 -
Spst3g00548 1413 Pfam Helicase conserved C-terminal domain 1256 1355 IPR001650 -
Spst3g00548 1413 MobiDBLite consensus disorder prediction 832 873 - -
Spst3g00548 1413 MobiDBLite consensus disorder prediction 833 855 - -
Spst3g00548 1413 Pfam SNF2-related domain 673 1057 IPR000330 GO:0005524|GO:0140658
Spst3g00548 1413 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 571 1412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00548 Spst-Chr3 8962184 8970076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00548 544 1412 RAD5 or RAD16-like Gene Family AT1G61140 58.491 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst3g00548 SNF2_N 1.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00548 - - gmx:100802436 2036.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00548 3 8962184 8970076 Spst6g00728 6 6568705 6577007 PCT