Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00544 ATGGTAGAGGGGAAGGCTGAAACTTTGTTTGGGGTTTCCATGAGTGAGGTTGTACAAGCACAGCTAAGAGTATTAGTTAAGGAAGAGAGAGTGAAGTGTCGGGGTCCCGGGAATGTTGAGGAGAACAAAGCAGCAGAACAGAGTGTGTCTGTGTCCATCTCTATGCACTTTGGACAACGGGAACCATATCTTCTTTTTTCACACTCCACACCCATCTTCTACACTTGCCTCATTTCCACTTTATTTGCCTCTGATTGCCAAAGGTTGAAAACAGTTTCTTTGGACGAAATGGGTCGTTGGAATTCAGACTTGAATTTGCACATTTGTAAATGTATCTTTTCAATGTTGATTTTCTGTGCAACTTTCTGCGTTGGGGACACTGATCCACTTGATGTTGCGGCAATCAATAGTTTGTATGTGGCTCTTGGCTCACCACCCCTTGAGGGGTGGAAAGCTATAGGAGGAGATCCATGCTTGGAGGAATGGCAAGGTGTGAGTTGTGTCTTCTCCAACATAACTGCTTTACGACTGGGAGGCATGAATCTAAGTGGACAACTGGGAAGTAATTTGGATTTCCCATCCATTATAGAATTGGATCTTAGCAACAACCAGATTGGAGGGGCCATTCCATCCACTTTGTCCCCTACTTTGAGGAACTTGTCACTTTCAGCTAATCAATTAAATGGAAGCATTCCAGATGCCTTATCCTCATTAACTCAATTGTCAGACTTGTCATTGAAAGATAACCATCTGAATGGACAAATTCCAGATGCATTCCCACAGCTCACTGGTTTGATGAATATGGATCTGTCAGGCAACAACTTGAGTGGTCAGCTGCCTCCCTCAATGGGGAATTTGTCATCTCTGGTCACATTACATTTGCAGCACAATCAACTTTCTGGGACCCTATTTGTTTTGCAGGACCTCCCCCTTCAGGATCTGAACATCGAGAACAATATATTCTCTGGGCCAATTCCTCCGGAGTTGTTGAGTATGCCTAATTTCAGAAAAGATGGGAATCCGTTTAATACTACTGTCATTCCATCACCTCCAGCTGCTTCCCCTGCACCCGTTGCTATGGCTCCTTCCCCAGAAAAATCACCTTGGAAAGTGGCAAATAATCCCTCTGCTACCACCATAAAAGCACCAATACCTGCAATTGCTGAGAGGTCTTTCAAAACTAAGAAATTAGTTTGGATTGTTGCTGCAGGCTTTTTATTATTCATTGCATTAGGAGTTTGTCTTCTAATGTTGTGGTGCTTTAAGAGAAGATCAGAGAATAAGAGCTATAAGAAACACAACATGAATGTGTATAAAAGATCTTTGCATAAATATACAAGCAATGACTCCCCTTTTGAAGCAACTGATGATGAGAAGAAAGGATGGTGTTCCAAACTTCCCCCACTGCAGCCAGCACCACCACATCAACTCCCAATCATTCCTGGAGAGAATTTACTCATCAATCGAACTATATCTGGCAATGCAACCAAAAGACAAATTGTAACAAATTTCATCCAAGTTTATACTGTTTCATCTCTTCAGCAGTACACAAATAGTTTTTCCCAAGAAAATTATATTGGGGAAGGCATGCTTGGGCCTGTTTATAGAGCTGAACTCCCAGATGGAAAGTCACTGGCAATTAGAAAGCTGAATGCTTCTGCTTCTGCTTCCATGGGACAAAATCACGAGCAGTTTCTTCAATTAGCTTCCAGTATCTCCAAAATTCAACATGCCAATATTGTAAAGCTTATGGGCTACTGTTCTGAGTATAGCCAACGACTACTTGTATATGAGTATTGCAGTAATGGCACCCTTCGTGATGCATTGCATACAGATGATAAACTTCAGATTAAACTTTCATGGGATGATCGCATTCAAGTGTCACTTGGAGCAGCAAGAGCTTTAGAGTATTTGCATGATTACTTTCAGCCACCCATTGTGCACCGAAACTTCACCTCTGCTAATATACTCCTTAATGACAAGTTGGAAGTGAAGGTCTCTGACTGTGGATTAGGTTCTTTACTATCTTCAGGCTCTTCTAGTAAGTTTTCGGGACACCAACTCACAGCTAATGGTTATAGTGCTCCAGAATATGAGTATGGAAGTTATACACTGCAAAGTGATGTCTTTAGCTTTGGAGTTGTAATGCTTGAACTCCTGACTGGACGAAAATCCTATGACAGCTCACTGCCACGTGGAGAGCAGTTTTTGGTGAAATGGGCAGTCCCTCAACTCCATGACATAGATGCATTGTCAAAAATGGTTGACCCCTCTTTAAATGGAGAGTATCCTAAGAAATCATTGTCACGTTTTGCAGACATTATTTCTTCATGTATACAGCATGAACCTGAGTTTCGACCAGCTATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 2403 0.4191 MVEGKAETLFGVSMSEVVQAQLRVLVKEERVKCRGPGNVEENKAAEQSVSVSISMHFGQREPYLLFSHSTPIFYTCLISTLFASDCQRLKTVSLDEMGRWNSDLNLHICKCIFSMLIFCATFCVGDTDPLDVAAINSLYVALGSPPLEGWKAIGGDPCLEEWQGVSCVFSNITALRLGGMNLSGQLGSNLDFPSIIELDLSNNQIGGAIPSTLSPTLRNLSLSANQLNGSIPDALSSLTQLSDLSLKDNHLNGQIPDAFPQLTGLMNMDLSGNNLSGQLPPSMGNLSSLVTLHLQHNQLSGTLFVLQDLPLQDLNIENNIFSGPIPPELLSMPNFRKDGNPFNTTVIPSPPAASPAPVAMAPSPEKSPWKVANNPSATTIKAPIPAIAERSFKTKKLVWIVAAGFLLFIALGVCLLMLWCFKRRSENKSYKKHNMNVYKRSLHKYTSNDSPFEATDDEKKGWCSKLPPLQPAPPHQLPIIPGENLLINRTISGNATKRQIVTNFIQVYTVSSLQQYTNSFSQENYIGEGMLGPVYRAELPDGKSLAIRKLNASASASMGQNHEQFLQLASSISKIQHANIVKLMGYCSEYSQRLLVYEYCSNGTLRDALHTDDKLQIKLSWDDRIQVSLGAARALEYLHDYFQPPIVHRNFTSANILLNDKLEVKVSDCGLGSLLSSGSSSKFSGHQLTANGYSAPEYEYGSYTLQSDVFSFGVVMLELLTGRKSYDSSLPRGEQFLVKWAVPQLHDIDALSKMVDPSLNGEYPKKSLSRFADIISSCIQHEPEFRPAMSEIVQDLLRMM 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00544 800 SUPERFAMILY Protein kinase-like (PK-like) 500 796 IPR011009 -
Spst3g00544 800 SUPERFAMILY L domain-like 133 335 - -
Spst3g00544 800 Gene3D Ribonuclease Inhibitor 133 348 IPR032675 -
Spst3g00544 800 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 128 353 - -
Spst3g00544 800 Gene3D Transferase(Phosphotransferase) domain 1 600 800 - -
Spst3g00544 800 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 488 599 - -
Spst3g00544 800 ProSiteProfiles Protein kinase domain profile. 520 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00544 800 Pfam Protein tyrosine and serine/threonine kinase 523 796 IPR001245 GO:0004672|GO:0006468
Spst3g00544 800 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 600 800 - -
Spst3g00544 800 Gene3D Phosphorylase Kinase; domain 1 484 599 - -
Spst3g00544 800 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 171 796 - -
Spst3g00544 800 Pfam Leucine rich repeat 244 299 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00544 Spst-Chr3 8931448 8941087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00544 117 800 Strubbelig Receptor Gene Family AT4G03390 50.732 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Spst3g00544 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00544 - - pvu:PHAVU_002G224200g 1204.5