Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00541 ATGGGAGCAGAGTTGGTGGTGACGTGGAGCACCTGGGAGGAGCTTCTTCTCGGTGGAGCTATTCTCCGGCACGGAAACCGAGATTGGACCGTCGTTGCCGCAGAACTCAAAACCCGAACCGTTTCGCCGTTCATTTTCACACCCGAGAGGTATTTCTTTTTGAAGGTTTGTAAAGCCAAATATGAACAGTTGCGACAGCAGTATTCTGGGTGCATGGCTTGGTTTGAGGAGCTTAAGAAGAAAAGAGTGGCAGAGCTTAAGAGAGATTTGGAGCTATCTGAAGAATTAATTGGGTCCCTTGAGTTGAAGCTTGAATCCCTTAAGACTGGAAGGGACGAGAAAAAGGCCGATTGCCGTGTTGATGATGGCTCAGTTGGACCCGAATTACATGTTCCGTCGCAGAAATTGGATAGAGTCGTGCCTTCCGCAAAAGAGATGTCAAAGGATGGGCTATCTGCTGGGAGTTTCACACAAGAAACCCAGACAAACTGGTCTCATGAATGTAAGGTTCCAGCAATGTCTTGTGAAGATGTGGAGACCAAGCCTGAAGTTTCAGGGTCTACTGAACGGAAGAAAATTTTGAATGTAGATAATAAGTCGGCTCACACTGTATATGAAGGGCAGGGAGGGTGTTTGAAAAAACGAAGAGGGAAGAGAAAGAGGAAGGATTGTGGCAGAAATATTAATGAAGCTAGTGTAAAAGAAAGTGATTTATCAGCTGATGTATGTAAAGAAAGTTCTACCAGCAACTGTGATGAGATCGCCAAATCTTCTGGTATGAATGAGGCAAACGCAATCTTCAAAAAGGATGAAGTAAAAGATTTGTTGGAGCTCTTGGATTCTTTTTTGTTAGTTCAAGGTGCTTCTGCCTTCTGTCGTAGGCATGATAGCCAGAAGCGAGGAAGATACAAGAAAATGATCCGGCAACACATGGACTTTGACACTATAAGGTCTAAAATCAACAATGGAACAATCAAGTCCATGATGGAGCTTTTAAGAGACTTGCTACTATTAACCAACAATGCTATAGCATTCTACTCCAAGATCACTCGTGAATACAAAATTGCTCTAAAACTGAGAGACCTTGCCATCAAAACATCGGCCGAGAAACTCAAGTTTTTGAGCAGCAGCAATGTCACCCTTGCCAATGCCTCTACCTCATCACCTGTGCATGAACCTCAAGCGAAAATCAAAAGCATGACCACGTCACCTGCGCATGATCCTCCAGTGAAGGCCAGAACCACATCACCTGTGCATGATCCTTCGGTGAAAGTCAGAAGCATGCGCCCTGGTAACCGCAAGATTCTTGCAAAGGTAGCTGGTGGCAGTAGCTCTGCTGAAAGGGTCTCACTTAGAGCTAAGAAAGAAGCTAATAAAGTTGATTCTCCATCTTCAGTGGAATCTTTACCCATTAAGAAGGCTTTTGGTGTTAAAACAAAAAAGATTGGACGTGAAAGTGCAGGTCAGAGACATGCAACACCAAGGAAGGGAAAGAAAAGAGGGAAAGCAAAGTGA 1515 0.4429 MGAELVVTWSTWEELLLGGAILRHGNRDWTVVAAELKTRTVSPFIFTPERYFFLKVCKAKYEQLRQQYSGCMAWFEELKKKRVAELKRDLELSEELIGSLELKLESLKTGRDEKKADCRVDDGSVGPELHVPSQKLDRVVPSAKEMSKDGLSAGSFTQETQTNWSHECKVPAMSCEDVETKPEVSGSTERKKILNVDNKSAHTVYEGQGGCLKKRRGKRKRKDCGRNINEASVKESDLSADVCKESSTSNCDEIAKSSGMNEANAIFKKDEVKDLLELLDSFLLVQGASAFCRRHDSQKRGRYKKMIRQHMDFDTIRSKINNGTIKSMMELLRDLLLLTNNAIAFYSKITREYKIALKLRDLAIKTSAEKLKFLSSSNVTLANASTSSPVHEPQAKIKSMTTSPAHDPPVKARTTSPVHDPSVKVRSMRPGNRKILAKVAGGSSSAERVSLRAKKEANKVDSPSSVESLPIKKAFGVKTKKIGRESAGQRHATPRKGKKRGKAK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00541 504 SMART bromo_6 268 372 IPR001487 GO:0005515
Spst3g00541 504 Gene3D - 263 379 IPR036427 GO:0005515
Spst3g00541 504 MobiDBLite consensus disorder prediction 383 426 - -
Spst3g00541 504 ProSiteProfiles Bromodomain profile. 291 353 IPR001487 GO:0005515
Spst3g00541 504 MobiDBLite consensus disorder prediction 383 401 - -
Spst3g00541 504 Coils Coil 83 103 - -
Spst3g00541 504 Pfam Bromodomain 278 357 IPR001487 GO:0005515
Spst3g00541 504 MobiDBLite consensus disorder prediction 438 504 - -
Spst3g00541 504 CDD SANT 8 42 IPR001005 -
Spst3g00541 504 CDD Bromodomain 288 365 - -
Spst3g00541 504 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 8 262 - -
Spst3g00541 504 SUPERFAMILY Bromodomain 264 370 IPR036427 GO:0005515
Spst3g00541 504 MobiDBLite consensus disorder prediction 478 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00541 Spst-Chr3 8905782 8909538 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst3g00541 Bromodomain 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00541 - - pvu:PHAVU_002G224000g 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00541 3 8905782 8909538 Spst6g00718 6 6495471 6500124 PCT