Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00527 ATGAACGACCTATTTTCAAACTCGTTCAAACAATACAGTGACCTGAAAGATCAGGCACAGGTAGATGACCTGGAGGCAGCGAAAGAAAGCGTGAACCTCGACAAGTTCTTCGACGATGTAGAGAACGTGAAAGAGGACATGAGGAGCGTGGAGAAGCTATACAGAAAGCTGCAAGAGGCGAACGAGGAGAGCAAAACGGTTCACAACGCCAAAACAATGAAGGAGCTTCGGGCGCGCATGGATCAGGACGTGGAGCAGGTGCTGAAGCGCGTGAAGGTGATAAAGGGGAAGCTGGAGGCGCTAGAGCGGTCGAACGCGGCGAACCGGAACCTGCCGGGGTGTGGGCCGGGTTCTTCGGCGGACCGGACGAGGACGTCGGTGGTGAGTGGGTTGGGGAAGAAGCTGAAGGACATGATGGACGATTTTCAGGGGCTGAGGATGCGCATGCAGATGGAGTACAAGGAGACGGTGGAGCGGAGGTACTTCACGATCACGGGGGAGAAGGCGGAGGAGGAGACGATCGAGAATTTGATATCGAGTGGGGAGAGCGAGAGCTTTCTGCAGAGGGCGATTCAGGAGCAGGGGAGGGGTCAGATAATGGACACGATTTCCGAGATTCAGGAGCGGCATGACGCAGTGAAGGAGATTGAGAGGAACTTGTTGGAGCTTCACCAGGTGTTTTTGGACATGGCGGCGCTCGTGGAGTCGCAGGGGCAGCAGCTCAACAACATCGAGAGCCACGTGGCGTATGCCAGTTCGTTTGTGCGACGGGGCACCGAGCAACTTCAGGAGGCCCGAGAACACCAGAAGAGTTCCAGGAAGTGGACGTGTTATGCCATCATTCTTGGCGCTGTGCTTGTTGTTGTGCTTCTCTTCCCTCTCTTGACTTCGCTTTTGCCTTATTTGTTGCGGAAGTGA 918 0.5512 MNDLFSNSFKQYSDLKDQAQVDDLEAAKESVNLDKFFDDVENVKEDMRSVEKLYRKLQEANEESKTVHNAKTMKELRARMDQDVEQVLKRVKVIKGKLEALERSNAANRNLPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRMRMQMEYKETVERRYFTITGEKAEEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIERNLLELHQVFLDMAALVESQGQQLNNIESHVAYASSFVRRGTEQLQEAREHQKSSRKWTCYAIILGAVLVVVLLFPLLTSLLPYLLRK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00527 305 Gene3D - 194 295 - -
Spst3g00527 305 SMART SynN_4 28 154 IPR006011 GO:0016020
Spst3g00527 305 Coils Coil 84 104 - -
Spst3g00527 305 Coils Coil 40 70 - -
Spst3g00527 305 CDD SNARE_syntaxin1-like 202 264 - -
Spst3g00527 305 FunFam Syntaxin 132 196 296 - -
Spst3g00527 305 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst3g00527 305 CDD SynN 33 190 IPR006011 GO:0016020
Spst3g00527 305 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Spst3g00527 305 PANTHER SYNTAXIN 41 287 IPR045242 -
Spst3g00527 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Spst3g00527 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Spst3g00527 305 Pfam SNARE domain 240 291 IPR000727 -
Spst3g00527 305 Gene3D - 30 162 - -
Spst3g00527 305 SMART tSNARE_6 198 265 IPR000727 -
Spst3g00527 305 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00527 Spst-Chr3 8734072 8734989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00527 1 302 SNARE and Associated Proteins AT1G61290 77.152 5.25e-178 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00527 K08486 - gmx:100818999 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00527 3 8734072 8734989 Spst3g00527 3 8734072 8734989 ECH
Spst3g00527 3 8734072 8734989 Spst6g00704 6 6380684 6381598 PCT