Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00512 ATGCGGAGTTTCACTTTCTTCGAACGAGTTTCTAGAGCTTGCCGTGACCATGGTTCCAACTTCAAGCTTGTACTCCTCTGCACCACCGTAAGTGGTGGAGGGCTTCTGGCTTACGGAGATTCTGTAGGGACATCTGAAGCGGTGGTGCCAGAGAAGAAAAAAGTGGTGGTGCTGGGAACAGGGTGGGCTGGCACGAGTTTCTTGAAGAATCTGAACAATCCCAGATATGAGGTTCACGTGGTCTCTCCTCGCAATTACTTTGCATTCACTCCTTTGCTGCCTAGTGTTACCTGCGGCACCGTCGAAGCCCGCAGCATTGTGGAACCCGTCCGCAATATTTTCCGGAAGAAAATGGTGGACATTCAATTCAGTGAAGCAGAATGTCTTAAGATTGACGCAGCAAACAGGAAGGTCTACTGTCAATCTAATATAAGTAATAATTTGAACGAGAAAGAAGAATTTGTTGTGGACTATGACTACCTAATCATAGCCGTGGGAGCAAATGTCAACACATTTAACACTCCCGGAGTGACAGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCGCAGAAGATTAGAAGAACCGTTATTGACTGCTTCGAGAGAGCAAGTTTGCCAAGTGTAAGTGAAGAAGAAAAAAAGAGAATTCTTCACTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTTGAGTTTGCAGCCTCACTACACGACTTTGTCACTGAGGATTTGGTCAAGTTATATCCTGGGATAAAAGATTTAGTTAAAATTACGCTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTTCTTTTGCTGAAGACAAGTTTCGAAGAGATGGTATTGATGTCAAAACAGGATCCATGGTTGTGAAGGTTTCTGATAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGAAATTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATAAAAGATTTTATGTCACAAATTGGTCAGACTAACAGACGGGCCGTAGCTACTGATGAATGGTTGAGAGTTGAATCAACTAACAACGTTTATGCACTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCTGCAATATTTAAAAAGGCTGACAAGGACAAGTCAGGAACTCTTACTGTCAAGGAATTTCAGGAGGTATTGGATGACATCTGTGAGAGATACCCTCAGGTGGAGCTATATCTAAAGAGTAAACAGATGCACGACCTTGCTGATTTGTTGAAAGAGTCCCAGGGAGATGTTGAAAAGGAATCTATCGAACTGAATATCGAAGAACTCAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCCGCCACAGCGCAGGTTGCATCTCAGCAAGGAACCTACCTGGCCAAGTGCTTTAATAGGATGGAAGAGTGTGAGAAAAATCCAGAGGGTCCCATTAGGTTCAGGGGAGAAGGGCGCCATCGCTTCAAACCTTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTCTAGGAGGAGAGCAAACAGCTGCACAACTTCCTGGGGATTGGGTTTCAATTGGACACAGCTCTCAGTGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAGGGCGTTAGTAGTATCAGACTGGACAAGACGCTTTATTTTTGGGAGGGATTCAAGTCAAATCTGA 1737 0.4347 MRSFTFFERVSRACRDHGSNFKLVLLCTTVSGGGLLAYGDSVGTSEAVVPEKKKVVVLGTGWAGTSFLKNLNNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKMVDIQFSEAECLKIDAANRKVYCQSNISNNLNEKEEFVVDYDYLIIAVGANVNTFNTPGVTENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVTEDLVKLYPGIKDLVKITLLEAGDHILSMFDKRITSFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTIPYGMAVWSTGIGTRPFIKDFMSQIGQTNRRAVATDEWLRVESTNNVYALGDCATINQRKVMEDIAAIFKKADKDKSGTLTVKEFQEVLDDICERYPQVELYLKSKQMHDLADLLKESQGDVEKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00512 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 577 - -
Spst3g00512 578 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Spst3g00512 578 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Spst3g00512 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 55 74 - -
Spst3g00512 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Spst3g00512 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 348 370 - -
Spst3g00512 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Spst3g00512 578 Gene3D - 45 406 - -
Spst3g00512 578 Gene3D - 420 577 - -
Spst3g00512 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 44 405 - -
Spst3g00512 578 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Spst3g00512 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 379 IPR023753 GO:0016491
Spst3g00512 578 SUPERFAMILY EF-hand 332 465 IPR011992 -
Spst3g00512 578 SUPERFAMILY FAD/NAD(P)-binding domain 214 373 IPR036188 -
Spst3g00512 578 Coils Coil 440 460 - -
Spst3g00512 578 SMART efh_1 380 408 IPR002048 GO:0005509
Spst3g00512 578 PANTHER NADH DEHYDROGENASE 50 578 IPR045024 GO:0003954|GO:0006116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00512 Spst-Chr3 8580678 8585319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00512 1 578 EF-hand Containing Proteins AT4G05020 70.787 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00512 K03885 - gmx:100809915 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00512 3 8580678 8585319 Spst6g00696 6 6270432 6276397 PCT