Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00506 ATGGGTAGATCACCTTGCTGTGACAAAAATGGCCTCAAGAAAGGGCCATGGACGCCAGAGGAAGACCAGAAACTTGTTGATTACATCCAGAAACATGGCTACGGCAATTGGAGAATACTCCCAAAGAATGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTCGACTCCGTTGGACAAACTATCTCCGACCAGACATAAAGCGTGGTCGATTCACTTTTGAAGAGGAAGAGACCATAATACAACTACATAGCATTCTTGGCAACAAGTGGTCAGCTATTGCTTCTCGTTTGCCTGGAAGAACAGACAATGAAATCAAGAACTATTGGAATACCCACATTAGAAAAAGGCTTCTAAGGATGGGAATTGATCCTGTGACACATAGGCCAAGGCTTGATCTTTTGGACCTCTCTTCCATCCTAAGTTCATCCCTCTATGGTCCAACACAGATGAACATCCAAAGACTGCTTGGTACACAGACAATGGTGAACCCTGAGCTTTTAAAGCTTGCTTCATCGCTCTTTTCTTCTCAGCATCGGGAAAACCTCAACATGTGTTCGCAAAACTGTGAAGAGAACTTGCTCTGTGATCCCCAAATTAACCAAATCCCACACTTGGTACAAACTCAGGACTTTGCTCAAGAACCATGTAAAACACTATGCAATACAATGAATCCCCCTTGTTCTTCGTTGCCATTGCCTTTCACTCAAGAACAGTTGGTTGAATGCAACATGAATCCGTACCCTTCAGTCTTCCATGACTCTTGCTTCCAACAACATTCTCAGCCAAGTGAGTTGCAATGCAACGGAATTGATACAAGTTATGTTGCTCAATTACCTAGCTATAACTACCATGGCTCTGATTATGACGCAAATCCAATGTCTGAATCCTCAACTTATAACCATTCCCATAACAGCAACCAGAACTTCAGCTTCGCTTCTGTTATTTCAACGCCTTCATCAAGCCCAACACCTTTGAATTCGAATTCGACGTATGTCAATGGAAGCAGCAGCACCGAGGATGAGATAGAAAGCTACGTCAGCAGCAACTTGTTGAGATTTGAAATCCCAGACATGTTAGGTGTGAATGAGTTCATGTAA 1095 0.432 MGRSPCCDKNGLKKGPWTPEEDQKLVDYIQKHGYGNWRILPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHRPRLDLLDLSSILSSSLYGPTQMNIQRLLGTQTMVNPELLKLASSLFSSQHRENLNMCSQNCEENLLCDPQINQIPHLVQTQDFAQEPCKTLCNTMNPPCSSLPLPFTQEQLVECNMNPYPSVFHDSCFQQHSQPSELQCNGIDTSYVAQLPSYNYHGSDYDANPMSESSTYNHSHNSNQNFSFASVISTPSSSPTPLNSNSTYVNGSSSTEDEIESYVSSNLLRFEIPDMLGVNEFM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00506 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 293 - -
Spst3g00506 364 CDD SANT 69 112 IPR001005 -
Spst3g00506 364 CDD SANT 16 61 IPR001005 -
Spst3g00506 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst3g00506 364 Gene3D - 13 66 - -
Spst3g00506 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst3g00506 364 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst3g00506 364 SMART sant 66 114 IPR001005 -
Spst3g00506 364 SMART sant 13 63 IPR001005 -
Spst3g00506 364 FunFam Transcription factor MYB39 69 130 - -
Spst3g00506 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst3g00506 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst3g00506 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst3g00506 364 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst3g00506 364 Gene3D - 69 116 - -
Spst3g00506 364 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00506 Spst-Chr3 8501575 8502861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00506 1 364 MYB Transcription Factor Family AT4G21440 55.585 6.67e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g00506 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00506 K09422 - gmx:100808310 521.546