Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00504 ATGACGAAGAAGCCGAAGGCAGAGGAAGCGGAGGAGCCTTTGCCTGACCATCTCCGTTGCGGGCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGACAACCTGAAGCTGTGTGAGATTCACTACCTCCAAGGTCGCCATCGGCAGTACAAAGAGAAGGTTCCGGAGTCGCTGAAGCTTCACCGGAAGCGCAAGACGAGCGAGGAGGAGCCTAATGCTGTGGACAATGTCGAATCTAGGGCACGGAGAACCTCAAGAATCGTAAAGAAGAAGCGCAGGCTTTCGGAGGGTTCCGAGGCGCTGGAGGTGGTGGCTCCTTCTCCCGCTAAGAAGAAGGCGCTGAAGCAGGGCGATATGCAGTTGGAGCTCATAAGGATGGTTCTCAAGAGAGAGGCGGAGAAGAAGAACAAAAACAGCAAGAGCAAGAAGAAGAATAAGAACAAGAACAAGAAGAAGAAGAAAAAAGAGGAGGAAGAGGAATTGTGTTACGGTGAAGGGGAGTTGAGGAGGGAATTGCCGAATGGTGTGATGGAAATCTCTCCGGCTTCGCCGACTCGTGATTACGACAATGTGGCTTCGCATTGTGACGTGAAAGTTGGTGTTGAAAGTAAAGCTGCTACTCCGCGTTACTTTAGGTCCAAGAATGTCGACAGAGTCCCTGTGGGGAAGTTGCAGATTGCGCCATATGGATCGAACTTGAAGAAAGGTACTAAAGGTAAGAAGAAGAAGTGTCATTGGTGCCAGAGAAGTGAGTCCTGCAATCTCATCCAGTGTTCGAGCTGTCAGAGGGATTTTTTCTGCATGGATTGCATCAAAGAGCGGTATTTGGACACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAACTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAATGTAAGGAATATTTAACTGGTAAGAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTCAAGCAGATAAATGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAGTTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAAGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATCACTGCAAGACACCCATTTTGGATCTCCATAGAAGCTGTCCAAGCTGTTCATATAGCCTATGCTCAAGATGTTGTCAGGAATTAAGTCAAGGAAAAGCTTCTGGAGAAATGAACTTATCTATGTTCAAGCGACTTGATAAAATGAAAACTAGCAGTGCTAGTGAGAGCCATACTTTGGATGAGAAGGTCACATCTAGTGGCAATTTAAATGATGCTTCAATATTGACTGAGTGGACAAATTGCAATGGCATTGATAGTCTATCATGCCCTCCTTCAGAGCTTGGTGGCTGTGGTAATAGCCACCTCGAGTTGAGATCTGTTTTCCCCTCCAGTTGGATCAAAGAGATGGAAGTGAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGCTGCTCATTGTGTTTTGACACCGATCACAACACTAACAGATACAAGCAGTTGCAAGAAGCGGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCGGCAGTGTTGGACATCAGTGGTGAAAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATTGTAGTCCGAGATGTGCTCCAAAATACATCAAACCTCAGTTGGGATCCACTGATCATGTTTTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAATAATAAAAACATACTTGAATCTTGTTTGGATTGGTGGGAGGTTGAAATTAACATCAGGCAGTACTTTTCTGGTTCAGTAAAACGGCGTCCTCAGAGAAATACTTGGCATGAGATGCTCAAACTAAATGGGTGGCTTTCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGCATCCCTTGTCAGGCCTGCTGAATTTAGCTGCAAATTTGCCACATCGGAGTGCAAAGCATGACATTGGACCATATGTCTATATTTCTTATGGCTCTACTGACAAAGAAACTGATTCTGTGACAACCCTCTGCTATGACTCATATGATGTGGTTAATATTATGACACATAGCACAGATGCCCCCCTCTCTACAGAGCAACTTACGAAAATAAGAAAACTACTGAAAAAGCACAAAACTCTGTGTCAAATGAAAACCATAGCTACTGAGGAGCCACATGAACAGAAAGTGAATGGAATGAATTTATTGCATGCTGAAGAAACAGAGCAAAGAGGCTTGCAGAGTATGGTTGAAGAAGGAATGAACTTTTTCAGAAGAGTCAATAGAACATCTTGCATCTCAACTGAAGCTAAAAGAGTTTCTAGTCAAAGCATGGACAGCAGTATTTCCCAGAATGGAGGATGTGATTTCTTTTCTGAATCTGATTCTGGACGCACTTTACTTCTCCTTGGGACTGTTCAAACCACTGAAATCTCTAAAAAGGATAATCCTAGAAAACCCTTTGAAAGCTCACAAAGACATAAAAATAAGTGTACTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTACCAAAGCTCATAGAATACCTTAAAAGACACTATGATGAATTTTCTTATACCCGTGACTATCACACCAAGGTAGTTCATCCAATTCTAGATCAGAACATTTTTCTTGATAGTACTCACAAAATGAGACTAAAGGAGGAATTTAAGATTGAACCATGGACTTTTCAGCAACACGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATTAGGAACTCTAAGTCTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAACGTTACCGAGGGTATCCAGTTGATTGATGAGGTCAGACTATTGCCCGATGACCATAAAGCAAAAGCCGAGATGCTGGAGGTAAAGAAAATGGCGCTTCATAGTATGAATACAGCAATTAAAGAAGTACGTCAGCTTACAAGCAAAACATGA 3093 0.4264 MTKKPKAEEAEEPLPDHLRCGRTDGRQWRCRRRVKDNLKLCEIHYLQGRHRQYKEKVPESLKLHRKRKTSEEEPNAVDNVESRARRTSRIVKKKRRLSEGSEALEVVAPSPAKKKALKQGDMQLELIRMVLKREAEKKNKNSKSKKKNKNKNKKKKKKEEEEELCYGEGELRRELPNGVMEISPASPTRDYDNVASHCDVKVGVESKAATPRYFRSKNVDRVPVGKLQIAPYGSNLKKGTKGKKKKCHWCQRSESCNLIQCSSCQRDFFCMDCIKERYLDTQNEVKKACPVCRGTCTCKDCSASQCKDSECKEYLTGKSRVDRILHFHYLICMLLPVLKQINEDQNIELETEAKVKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCPSCSYSLCSRCCQELSQGKASGEMNLSMFKRLDKMKTSSASESHTLDEKVTSSGNLNDASILTEWTNCNGIDSLSCPPSELGGCGNSHLELRSVFPSSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKQLQEAALREDSNDNYLFCPAVLDISGENFEHFQKHWGKGHPIVVRDVLQNTSNLSWDPLIMFCTYLEQSITRYENNKNILESCLDWWEVEINIRQYFSGSVKRRPQRNTWHEMLKLNGWLSSQIFKEQFPAHFAEVIDALPVQEYMHPLSGLLNLAANLPHRSAKHDIGPYVYISYGSTDKETDSVTTLCYDSYDVVNIMTHSTDAPLSTEQLTKIRKLLKKHKTLCQMKTIATEEPHEQKVNGMNLLHAEETEQRGLQSMVEEGMNFFRRVNRTSCISTEAKRVSSQSMDSSISQNGGCDFFSESDSGRTLLLLGTVQTTEISKKDNPRKPFESSQRHKNKCTEHLGAQWDVFRRQDVPKLIEYLKRHYDEFSYTRDYHTKVVHPILDQNIFLDSTHKMRLKEEFKIEPWTFQQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVTEGIQLIDEVRLLPDDHKAKAEMLEVKKMALHSMNTAIKEVRQLTSKT 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00504 1030 FunFam Uncharacterized protein 549 792 - -
Spst3g00504 1030 MobiDBLite consensus disorder prediction 1 22 - -
Spst3g00504 1030 Pfam WRC 15 56 IPR014977 -
Spst3g00504 1030 Coils Coil 132 164 - -
Spst3g00504 1030 MobiDBLite consensus disorder prediction 139 154 - -
Spst3g00504 1030 MobiDBLite consensus disorder prediction 59 86 - -
Spst3g00504 1030 MobiDBLite consensus disorder prediction 59 103 - -
Spst3g00504 1030 Pfam JmjC domain, hydroxylase 878 971 IPR003347 -
Spst3g00504 1030 ProSiteProfiles JmjC domain profile. 680 993 IPR003347 -
Spst3g00504 1030 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Spst3g00504 1030 ProSiteProfiles Zinc finger RING-type profile. 247 293 IPR001841 -
Spst3g00504 1030 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 1029 IPR045109 GO:0032454|GO:0033169
Spst3g00504 1030 MobiDBLite consensus disorder prediction 133 163 - -
Spst3g00504 1030 SMART cupin_9 661 993 IPR003347 -
Spst3g00504 1030 SUPERFAMILY Clavaminate synthase-like 557 1016 - -
Spst3g00504 1030 Gene3D Cupin 553 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00504 Spst-Chr3 8475593 8481323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00504 15 104 GRF Transcription Factor Family AT4G37740 34.375 9.97e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst3g00504 JmjC 1.9e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00504 K15601 - gmx:100810673 1753.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00504 3 8475593 8481323 Spst6g00689 6 6205385 6211132 PCT