Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00493 ATGGCGACTCATCATCTTCCCGACCACTTCAAGTGTCCAATTTCCCTAGAAATAATGTCGGACCCTGTAATCCTCTCTTCGGGTCACACCTTCGACCGTTCTTCAATCCAACGTTGGCTAGACGCAGGCTACAGAACATGTCCAATTACCAAATTGCCCCTCCCGGACCACCCTTCCCTCATTCCTAACCACGCGCTCCGAAGCTTAATCTCCAACTACACCCTCCTCCCCTCTCTCCACCAAACCATTTCCCAACCACAAACCCTAATTTCCACCCTCACCTCTCCCTCTTCTTCCTCCGATTCTAAAATCGATTCCCTCCGCCACCTCACGCGCCTCTCCAAGCGCGACTCCGCCTTCCGCCGCCACCTCGCCGACTCCGCTGCCGTCCCCGCCGTCCTCTCCGCCGTCGTCGAGCCCGCGCTACAGGAGAAGGCGCTCCTGCTCCTCCTCAACCTCACCCTCGACGACGACTCCAAGGTCGGCCTCGTCGCCGAGGGCGTCGTCGAGCGTCTCGTCGCCGTTCTCCTCAACGCGCCGCCGGACTGTCGCGCCGTCGCGGCCACCATCGTCACTAGCCTCTCAGTCGTCGAGGTTAACAAGGCCACTATCGGCGCGTTCCCGGCGGCGATCGCGGCGCTCGTTGCGATCCTCCGCGACGGCAAAGGGAGGGAGAGGAAGGAGGCCGCCACCGCGCTCTACGCCCTCTGCTCCTTTCCCGATAACCGAAGAAGAGCCGTCAATTGCGGCGCGGTGCCGATTCTGCTTCGGAACATTGAAATTGGACTGGAACGATGCGTTGAGGTAATTGGCGTTTTGGCGAAGTGTAAGGAAGGGAGAGAGCAAATGGAAGGTTATGACGGTTGTGTTCAGATTCTGGCTCGCGTTTTGAGGAACGGGAGCTCCAGGGGGATTCAGTATGCGCTTTTCGCCCTTACTTCACTTTGCTTGTATAGCCAGCGAATGTTGCTGTTGGCTCTGGAAGAAGGCGTTCTGGACGCTTCTCTTGGGTTTGTCGAAGATGATAATGAAAAAGTGAGGAGGAATGCGTGTAATTTGCTTCGAGCTCTCCGTGCCAACAACAGCAACCACGATCGGGTGTAG 1104 0.5761 MATHHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGYRTCPITKLPLPDHPSLIPNHALRSLISNYTLLPSLHQTISQPQTLISTLTSPSSSSDSKIDSLRHLTRLSKRDSAFRRHLADSAAVPAVLSAVVEPALQEKALLLLLNLTLDDDSKVGLVAEGVVERLVAVLLNAPPDCRAVAATIVTSLSVVEVNKATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVNCGAVPILLRNIEIGLERCVEVIGVLAKCKEGREQMEGYDGCVQILARVLRNGSSRGIQYALFALTSLCLYSQRMLLLALEEGVLDASLGFVEDDNEKVRRNACNLLRALRANNSNHDRV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00493 367 CDD RING-Ubox_PUB 7 56 IPR045210 -
Spst3g00493 367 PANTHER U BOX DOMAIN-CONTAINING 7 355 - -
Spst3g00493 367 SUPERFAMILY RING/U-box 5 74 - -
Spst3g00493 367 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Spst3g00493 367 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Spst3g00493 367 FunFam RING-type E3 ubiquitin transferase 70 261 - -
Spst3g00493 367 Pfam U-box domain 7 73 IPR003613 GO:0004842|GO:0016567
Spst3g00493 367 Gene3D - 208 367 IPR011989 -
Spst3g00493 367 Gene3D - 81 207 IPR011989 -
Spst3g00493 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Spst3g00493 367 FunFam RING-type E3 ubiquitin transferase 5 76 - -
Spst3g00493 367 SUPERFAMILY ARM repeat 87 360 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00493 Spst-Chr3 8318223 8319326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00493 6 357 U-box Gene Family AT4G21350 58.678 3.36e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00493 - - gmx:100785141 554.288