Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00491 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAACTGGTGGAATGGTACCATTGATTCAGCCAGAAGTGTATTCCCTTTAAGCTCATCGTCGATTTCTCCTTCTCCTTGTTCCGTGGCGGCTAGTCAAGATGCAGGAGTCTATAGCACCCGGCAAGCAGACTTGAAGGCAACCAAGTGTTGTACTGAAGAGACAGACAGCTTGGTTTCTGACACTTACCTGGGCTTTGTTGATGCACAGAAGCCACACAAGAGTGAATCAGCCAGTGAAAGTGGTGTCATGTTGACCGATTCGACCTTACAGATGATGGGTTTTGGCCTCACATCTTCAACATCAGAGAATTGGAATCAACCTCTATTATTGGAACTTGATCTTATCAAAGCATATATGGAGTATACTATAGCTCTTAACTGTTTCTTCCTATTGGATTCTCCTAACCAAGACCATATATTTTGTCTTTTTTTTTTATCCTATAGTCGATGTAGTGGAAGGTCAGAGAGCAATTTTCATTCCGTGCTTCAGGAAGAAACGGGAATAGATTCTTCTAATTCACAAATCCATAGGGATTGGATCCCAAAGAGCTTCTCCTCTGGTGGCGGAGGAGACCAAATTGATAATTTCAAGCCATTGAACCAAGAATTTTCACTAGATCACCAGAGTCCAAGTTCTTTAACTGGGTTATCATCAAATCGTGATTTCTCGATTGGATCAGACTCATATGGTAACCCTTCAACGATACAAAGCTTATATGACCCTGATCCTCGTCCACAATTACCACAGCACTCACTTTTCACCAACCGTCCCATGTCCTATTCATCAAAGGCAAGTTATGGGACACCCTGCACTGAACTAACGCCATCATGGTCTAAAGTCTCTACCTTTTTGAAGCCCACAACAATTGCAAAGCAACAACCTGTTGGAATTCACTTTTCTAACAACACCCCTTTCTGGAATGCTTCCGCCGACGCACTTAACGACATAAGAGTAGGTACCTTTGCTTCATCACAATCACAATACCAAACGCCAACCTTTGTTCAAGAGAAACCCAATAGCCCAATTACTCTATTAAACAAGATCAACAGTGAAGAAACTCTAGATTCAGCAACAATGGCGAAGAAAAATGTTTGTGAACCAGCATTAAAGAGGCCAAGAATTGAAACTCCATCCCCATTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACCGCATCCGTTCTTCACGAAGCCATCGAGTACATTAAGTTCCTTCATGATCAAGTCAATGTTTTGAGCACCTCATATATGAAAAATGGAGCTCCCATTCAACCGAAGCAGGGCTGCGATGATCTGAAAAGCTCAGAAGGACCACAGCAAGATTTAAAAAGCCGAGGACTGTGTTTGGTACCGATTTCAAGCACATTTCCAGTGGCAACAGAAACCACTAGTAGTGCTGAATTGTGGACGCCTACATTCAGGGGCGCACTCTTGAGATAG 1530 0.432 MAEEFQARICGENWWNGTIDSARSVFPLSSSSISPSPCSVAASQDAGVYSTRQADLKATKCCTEETDSLVSDTYLGFVDAQKPHKSESASESGVMLTDSTLQMMGFGLTSSTSENWNQPLLLELDLIKAYMEYTIALNCFFLLDSPNQDHIFCLFFLSYSRCSGRSESNFHSVLQEETGIDSSNSQIHRDWIPKSFSSGGGGDQIDNFKPLNQEFSLDHQSPSSLTGLSSNRDFSIGSDSYGNPSTIQSLYDPDPRPQLPQHSLFTNRPMSYSSKASYGTPCTELTPSWSKVSTFLKPTTIAKQQPVGIHFSNNTPFWNASADALNDIRVGTFASSQSQYQTPTFVQEKPNSPITLLNKINSEETLDSATMAKKNVCEPALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQPKQGCDDLKSSEGPQQDLKSRGLCLVPISSTFPVATETTSSAELWTPTFRGALLR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00491 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 386 435 IPR011598 GO:0046983
Spst3g00491 509 FunFam Transcription factor bHLH123 family 396 458 - -
Spst3g00491 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 396 451 IPR036638 GO:0046983
Spst3g00491 509 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 210 487 - -
Spst3g00491 509 CDD bHLH_AtbHLH_like 392 443 IPR045239 -
Spst3g00491 509 Gene3D - 396 454 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00491 Spst-Chr3 8290587 8293484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00491 247 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 44.364 3.33e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00491 - - gmx:100784084 708.368