Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00480 GATATGCAAAGGGCTACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTTCTGTTTATAAAGCACAGATGGCTACAGGTGAGACAGTTGCAGTTAAAGTCCTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTATCTGAGGTTTTATTACTCGGAAGATTACATCACAGAAACCTGGTTGATTTGGTGGGATATGTGGCAGAAAGAGGACGACATATGCTTCTTTACACTTACATGAGCAATGGCAGTCTTGCTTCCCATTTGTATGATTTCGGGAAAAATCATGAGCCATTGAGTTGGGATTTGAGGCTTGGCATAGCACTGGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGCTGGATCAGTCTATGAAGGCCAAGGTCACTGACTTTGGGCTTTCCAGACCAGAGATGATCAAACCTCGCACATCGAAGATCCGAGGAACTTTCGGCTATCTTGACCCTGAGTACTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTTATCACAGGCAGGAATCCGCAGCTAGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGAGGATAAGGTTGGATGGGAAGAAATTGTGGACGGACAATTAAATGGAAAATATGATGTGCATACTCTTAACGACATTGCTTCACTTGCTTTCAAATGTGTCAATGAAGTCTCCGAAAGACGACCCTCGATGTGTGAAAATTTTCAAGAATTATCTCAGCTTTCTAAGAGGCATAGTAAAATTAATGGCCCAACATCATCTGCTGCTGCATTAAAGGAAATGTGCATTGGAATCGACCAGACTGAAACTCAGGGCTTTTCATCAATTGAGCGCACAAACTTATTGGGGAGATTGCATAGCCGATGA 969 0.4293 DMQRATSNFTTIIGNGAFGSVYKAQMATGETVAVKVLGTNSRQGEQEFLSEVLLLGRLHHRNLVDLVGYVAERGRHMLLYTYMSNGSLASHLYDFGKNHEPLSWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQSMKAKVTDFGLSRPEMIKPRTSKIRGTFGYLDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGEDKVGWEEIVDGQLNGKYDVHTLNDIASLAFKCVNEVSERRPSMCENFQELSQLSKRHSKINGPTSSAAALKEMCIGIDQTETQGFSSIERTNLLGRLHSR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00480 322 CDD STKc_IRAK 13 275 - -
Spst3g00480 322 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Spst3g00480 322 PANTHER OS01G0750732 PROTEIN 1 287 - -
Spst3g00480 322 FunFam calcium/calmodulin-regulated receptor-like kinase 1 83 292 - -
Spst3g00480 322 SUPERFAMILY Protein kinase-like (PK-like) 5 267 IPR011009 -
Spst3g00480 322 Pfam Protein tyrosine and serine/threonine kinase 9 267 IPR001245 GO:0004672|GO:0006468
Spst3g00480 322 PIRSF ILK 2 285 - -
Spst3g00480 322 ProSitePatterns Protein kinases ATP-binding region signature. 13 35 IPR017441 GO:0005524
Spst3g00480 322 SMART serkin_6 7 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00480 322 ProSiteProfiles Protein kinase domain profile. 7 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g00480 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Spst3g00480 322 Gene3D Transferase(Phosphotransferase) domain 1 83 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00480 Spst-Chr3 8022916 8025817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00480 2 267 Receptor kinase-like Gene Family AT1G67720 44.565 1.55e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Spst3g00480 PK_Tyr_Ser-Thr 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00480 - - gmx:100816549 529.635