Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00456 ATGTTGTATGTTTTGGTGGGTTGCTTCTGCAACGCCTGCACCCGTGGCTTTGACGTACCTGCTGAGTCTTACAGTGATTACATTACAGTGTGGATCGTGCAGATTGATGATGTTGCCTCCCGTGATAACTCGGTCGAGCTGATATTACATCTATCTGTTGTTGATTGCAGAATTGGTTTCTTAATGGAGATGTCATTCATCAGAGAATTACCTTATATGAAGGAGCAGGAAATAATGGAGGACACTAGTTTTCTCCATCAGTGGCACTTGAGTTCTATTGGTGACCCGAACTTACTGCCAATAGCTGCTGTTTTTGGAGACACTTTACAACATCATACATTTACTTATCCAGACCTCAATCCCCAAGCTTCTAGGGAAACTACACTTACTAACATTGAAAGGCCAACAAAACATCATAAAAACAACATTAGCTGGAACCCCAACAGAAGTGCTGCTCAGATATCATCAGAGACACAATTTGTTTCTTTCCCAAATCTTCTTCCGTTTATGGATTCCAATCACATAAGTCCATCGGGATTAGTGAAGACCGAGGATGAAATGGCTTGTCCTATAACTAATAACACAACTTCTCCAGACACGATCTCTCAAGGAATATTGGGGAATCATAACTATCTCTTCAAGGCCAGCCAGACCAAAAAGATTGGAACACGCACTAAAATTTCTCAACCTCAAGACCACATCATAGCTGAAAGGAAGCGACGAGAGAAGCTCAGCCAGCGGTTCATTGCTTTATCTGCCCTTGTTCCTGGATTGCAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAACTACTTGAAGCAATTGCAAGAGAAAGTAAGGGCTCTTGAGGAGGAACAAAACATGAGGAAAAATGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTATCCAACGATGTTAACAACTCTTCTTCAGAATATGATGCTACATTATTTGACGAAACAATTCCTGAAATTGAAGCAAGATTCTGTGAGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGACCAAAGGAATTGTGGAAAAAACAATCCATGAAATTGAGAATCTCCATCTGAAAGTCACCAATAGCCATGCCATGACATTTGGGAGATGTGCCCTTGATATGACAATTATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATGTTGTGAGAAACCTACGCTCAGCTTTTACATCTTTCATTACTCAGTCAGATATCATGTCCATCGAGATTCCTGCCAACAAAAACCTTTTTCAGAAATTTCATCAACAAGCTGGCAACGCTTTTAATAAAGGCAAAGGGGTCACCATTGTTGTTCCTCCGGCTGAACTGCGCTCTCCTTCTGATGCGCGCAAAAAACACAAGAGGAAGGAGAAAGAAAATCATCGCAACAACTCAAGTCCTAACTCCGCCCTCTACTCCTCCAACCGATTTTTTGGCATTGACCATCACATCAGTTCCAAGGAGGAGCTAGCACGAGCCACAGAGGAAAATAAGGTTGCGACCGCTAAGATGATCGAATTGTCATCTCTTTATGAGGCAGAGGTTGCCGTGAAGATCTCGACAGAGAAAGATCTTGCTGAAATAAAGGACTACATAGTCCAAGAACATATCAAGGACTTTAATAAGACCATTCGCTAG 1662 0.4176 MLYVLVGCFCNACTRGFDVPAESYSDYITVWIVQIDDVASRDNSVELILHLSVVDCRIGFLMEMSFIRELPYMKEQEIMEDTSFLHQWHLSSIGDPNLLPIAAVFGDTLQHHTFTYPDLNPQASRETTLTNIERPTKHHKNNISWNPNRSAAQISSETQFVSFPNLLPFMDSNHISPSGLVKTEDEMACPITNNTTSPDTISQGILGNHNYLFKASQTKKIGTRTKISQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAINYLKQLQEKVRALEEEQNMRKNVESVVIVKKSQLSNDVNNSSSEYDATLFDETIPEIEARFCERNVLIRVHCEKTKGIVEKTIHEIENLHLKVTNSHAMTFGRCALDMTIIAQMDMEFCMGVKDVVRNLRSAFTSFITQSDIMSIEIPANKNLFQKFHQQAGNAFNKGKGVTIVVPPAELRSPSDARKKHKRKEKENHRNNSSPNSALYSSNRFFGIDHHISSKEELARATEENKVATAKMIELSSLYEAEVAVKISTEKDLAEIKDYIVQEHIKDFNKTIR 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00456 553 Gene3D - 226 302 IPR036638 GO:0046983
Spst3g00456 553 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 277 IPR011598 GO:0046983
Spst3g00456 553 PANTHER BHLH TRANSCRIPTION FACTOR 105 406 - -
Spst3g00456 553 Pfam Helix-loop-helix DNA-binding domain 231 278 IPR011598 GO:0046983
Spst3g00456 553 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 292 IPR036638 GO:0046983
Spst3g00456 553 MobiDBLite consensus disorder prediction 447 480 - -
Spst3g00456 553 Coils Coil 267 297 - -
Spst3g00456 553 CDD bHLH_AtNAI1_like 231 303 - -
Spst3g00456 553 SMART finulus 234 283 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00456 Spst-Chr3 7669634 7679789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00456 72 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.886 4.57e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g00456 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00456 - - vun:114179595 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00456 3 7669634 7679789 Spst3g00456 3 7669634 7679789 ECH
Spst3g00456 3 7669634 7679789 Spst6g00636 6 5773245 5775189 PCT