Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00446 ATGGAGAACTATCAATATCCGTCCTACCCTGACTCCGGCGACTCCTCGCCGCGTTCCAGGGAGATCGACTTCGAGAACCCGCCGCCCTGGGACGAGCAGCAGAGTCAGAACTACAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCGCGAACCCACGACAACCAGCTCTCCTATGTCGGCGGCGACACCAAGATCCTCGCCGTCGACCGCACCATCAAGTTCGCCTCCTTCCTCTCCAAGCTCGCCGCGCTCTGCGACGCCACGCCGCAGGACCTCACCTTCAAGTACCAACTCCCTGGCGAGGACCTTGACGCCCTAATCTCCGTCACCAACGACGATGACCTCGAACACATGATGCACGAGTACGATCGCCTCTATCGCCCTAACTCCAAACCCGTCAGGATGAGACTCTTCCTCTTCACGCTCTCCTCAAACCCTAATTCCTCTTTCTCCTCCGACCGCGATCGCTTTGTCGACGCTCTTAACTCTGCTCCAATTCCTCCGCAACCCGACCCCATCAAAACCCCTCCAGTTACTCCTTCGAATGTTGATTACCTCTTCGGTCTGGACAAGGCCGTTGCTCCTCCCACTCTCCCCCCTTCCTTCGCCGCAGTTAAGTTTCATGATCCCGCACCAGAGCCTGTCGCGCCGCCGCCGGAGTATCAGTCCCGCGGCGGAATATCCGTTTCTGATCGCGCCGTCGGATCGGATCCGAACGCGATCGAGATTCAGAGACAGTTGCAGCAGGAGATGCAGCGTTTGCAGATGGCTGAGAATGAATACCGGAGGAGGAGTGAGGATGGTTTCGCCGGTGGCTTTACTGCTGCCGGGGGGGATTATTACATGCAGAAGATGCCGGAGAAGGTTCCGCCAACTAATGCACCGCATCCCGCCGGTTACTGGCAGGAGAAACAGTTTTCTGGCGAGGGTTTCCAGACAACGGTCACGACGGCTCCAGGAGGTGGTGATCAGCAGGTCTATGTTATCCCGGCGCCGGGGACGTTCTACCACGCGCCGGTGGTGCGGCCTCCGGCGGCGCAGGGCTACTACGCGGTGCAGAGAATGGGGTCTGAGGGTTACCGTGAGCAGGCGGTGTACGGCGGTATGGCTCCACCTAAGCCTGCGTTTTCATCGGCGGGGCCGGCGCAGCCGGTTAAGCCTTCGGGGTATCCGGAGGGATACGGCGTCGTGAGGCCTCCTGGGGTGCCGGATAATGCGGCGTACGCTCAGGTGGCGTATGATAGTGCGAGCGGGAGGCAGGTTTACTACACTGCGCAGGGAGGGGTGGTGCACGCGCCGCCGCAGTACCAAGGGGTTCCTCCGGTGGTGGGCTCGGATGTGAGGCCGGTTGGGGTTTCGGTGGGCCAGGATGTTAAGGTGGTTAACAAGGTTAACCAAGGTTCTGTGTGA 1419 0.6011 MENYQYPSYPDSGDSSPRSREIDFENPPPWDEQQSQNYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRTIKFASFLSKLAALCDATPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNSKPVRMRLFLFTLSSNPNSSFSSDRDRFVDALNSAPIPPQPDPIKTPPVTPSNVDYLFGLDKAVAPPTLPPSFAAVKFHDPAPEPVAPPPEYQSRGGISVSDRAVGSDPNAIEIQRQLQQEMQRLQMAENEYRRRSEDGFAGGFTAAGGDYYMQKMPEKVPPTNAPHPAGYWQEKQFSGEGFQTTVTTAPGGGDQQVYVIPAPGTFYHAPVVRPPAAQGYYAVQRMGSEGYREQAVYGGMAPPKPAFSSAGPAQPVKPSGYPEGYGVVRPPGVPDNAAYAQVAYDSASGRQVYYTAQGGVVHAPPQYQGVPPVVGSDVRPVGVSVGQDVKVVNKVNQGSV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00446 472 PANTHER OS05G0427100 PROTEIN-RELATED 9 351 - -
Spst3g00446 472 SMART PB1_new 54 145 IPR000270 GO:0005515
Spst3g00446 472 Coils Coil 243 270 - -
Spst3g00446 472 MobiDBLite consensus disorder prediction 1 15 - -
Spst3g00446 472 CDD PB1_UP2 43 143 - -
Spst3g00446 472 Pfam PB1 domain 55 143 IPR000270 GO:0005515
Spst3g00446 472 Gene3D - 60 144 - -
Spst3g00446 472 MobiDBLite consensus disorder prediction 1 34 - -
Spst3g00446 472 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 59 145 - -
Spst3g00446 472 SUPERFAMILY CAD & PB1 domains 55 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00446 Spst-Chr3 7597438 7598856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00446 38 166 MAP Kinase Kinase Kinase AT5G57610 43.382 1.58e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00446 - - gmx:100810467 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00446 3 7597438 7598856 Spst6g00628 6 5687611 5688987 PCT