Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00441 ATGGGGAGAGGAAAGATTCCCATTCAAAAAATCGAAAATTTGACGAATCGGCAAGTAACTTTCTGTAAGAGAAGAAATGGGTTAGCGAAGAAAACTAGAGAACTATCTGTTCTCTGTGATGCAGAAGTTGGACTGATTATGTTTTCCTGCACGGGCAAGCTCTATGAGTATTCAAACACCAGTGATTAG 189 0.3968 MGRGKIPIQKIENLTNRQVTFCKRRNGLAKKTRELSVLCDAEVGLIMFSCTGKLYEYSNTSD 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00441 62 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Spst3g00441 62 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g00441 62 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g00441 62 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst3g00441 62 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g00441 62 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g00441 62 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g00441 62 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Spst3g00441 62 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Spst3g00441 62 Gene3D - 13 62 IPR036879 GO:0003677|GO:0046983
Spst3g00441 62 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00441 Spst-Chr3 7542083 7544803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00441 1 61 MADS-box Gene Family AT4G09960 75.410 5.96e-29 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g00441 SRF-TF 6.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00441 K09264 - gmx:100779119 112.464