Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00439 ATGGGGAGAGGAAAGATCGTGATTCGAAGGATCGATAATTCGTCTAGCCGGCAAGTGACCTTTTCCAAGAGAAGAGGTGGGTTGGTTAAGAAAGCTAGAGAGCTATCCATTCTGTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGAATTTGCTAGCACAAGCATGAAATCTGTTATCGATCGCTATAACAAGGTCAAAGAGGACCATCACCACGTAATGAATCCTGCTTCAGAAATCAAGACATCATACTCTAGCAAAACTCATTGCGCTAAGATAACTATCCCTTTCTTTGATGGTTCATTTGATATCAAAGAAATGGAAGAGAGGAAAGAAGAGAGTGAATGGTTATGTAGAAGAGTAGAAATGTGA 390 0.4077 MGRGKIVIRRIDNSSSRQVTFSKRRGGLVKKARELSILCDAEVGLIVFSSTGKLYEFASTSMKSVIDRYNKVKEDHHHVMNPASEIKTSYSSKTHCAKITIPFFDGSFDIKEMEERKEESEWLCRRVEM 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00439 129 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst3g00439 129 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Spst3g00439 129 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g00439 129 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g00439 129 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g00439 129 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst3g00439 129 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g00439 129 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Spst3g00439 129 Coils Coil 110 129 - -
Spst3g00439 129 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g00439 129 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Spst3g00439 129 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 116 - -
Spst3g00439 129 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00439 Spst-Chr3 7490638 7493220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00439 1 87 MADS-box Gene Family AT4G37940 78.161 2.91e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g00439 SRF-TF 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00439 K09264 - gmx:100779647 155.606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00439 3 7490638 7493220 Spst6g00618 6 5577075 5584143 PCT